Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P10
         (257 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-3|AAB37077.1|  282|Caenorhabditis elegans Ground-like (gr...    27   2.4  
AC024779-4|AAK68484.1|  439|Caenorhabditis elegans Hypothetical ...    27   2.4  
U23521-6|AAC46812.1|  469|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z66519-6|CAA91374.3|  394|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z83234-2|CAB70170.2|  715|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    25   7.4  
U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    25   9.8  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    25   9.8  

>U53148-3|AAB37077.1|  282|Caenorhabditis elegans Ground-like (grd
           related) protein10 protein.
          Length = 282

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 178 GLYQGRNVRTAPVVLVVKVNR 116
           GLY+ +N+R APV   V V+R
Sbjct: 158 GLYRSKNIRRAPVEPTVHVHR 178


>AC024779-4|AAK68484.1|  439|Caenorhabditis elegans Hypothetical
           protein Y43B11AL.1 protein.
          Length = 439

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 95  RLLSCEHSIDFDHEYNRSSPYVTPLIKTSMKAALR 199
           RL + EH + F H+Y    PY+T   K   +  LR
Sbjct: 45  RLRAVEHHVKFSHDY----PYITTKSKNDGECCLR 75


>U23521-6|AAC46812.1|  469|Caenorhabditis elegans Hypothetical
           protein F41C3.5 protein.
          Length = 469

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 137 YNRSSPYVTPLIKTSMKAALRKLIHLGRTRMLC 235
           Y +    +TP IK  +K  +R L++ G T M C
Sbjct: 365 YQKQYTDMTPFIKKIVKNHVRVLLYYGDTDMAC 397


>Z66519-6|CAA91374.3|  394|Caenorhabditis elegans Hypothetical
           protein B0334.6 protein.
          Length = 394

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 104 SCEHSIDFDHEYNRSSPYVTPLIKTSMKAALRKLIHLGRTRMLCL 238
           S   S  F+H Y+R   Y+  L  T  K+++  ++     R LC+
Sbjct: 107 SLAFSTSFNHFYSRIVLYIRTLASTFYKSSVLIVVAFNIERYLCV 151


>Z83234-2|CAB70170.2|  715|Caenorhabditis elegans Hypothetical
           protein K09E4.4 protein.
          Length = 715

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 21  YCVWVVDYSRTNHHDSSISIRR 86
           +C W++++   NH + SIS+ R
Sbjct: 683 FCDWILEHDDFNHTEFSISVFR 704


>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 110 EHSIDFDHEYNRSSPYVTPLIKTSMKAALRKL 205
           E S D D  Y RSSP + P  +  M++ + +L
Sbjct: 810 ERSFDQDATYERSSPLLEPCEEPVMESRVPEL 841



 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 110  EHSIDFDHEYNRSSPYVTPLIKTSMKAA 193
            E S D D  Y RSSP + P   +S + A
Sbjct: 2607 ERSFDQDVTYERSSPLLIPTPSSSFEQA 2634



 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 110  EHSIDFDHEYNRSSPYVTPLIKTSMKAALRKL 205
            E S D D  Y RSSP + P  +  M++ + +L
Sbjct: 2513 ERSFDQDVTYERSSPLLEPYEEPVMESKVPEL 2544


>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
           protein 2, isoformc protein.
          Length = 936

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 77  YSQVIARLLSCEHSIDFDHEYNRSSPYVTPL 169
           Y+++   L S + + +FD E+    P +TP+
Sbjct: 879 YNKIKVLLKSADDTSNFDSEFTHEVPKLTPI 909


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
           protein Y11D7A.14 protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 244 MVKTQHSCPSQMYKLPQGSFHRGLYQGRN 158
           + + Q+  P  +Y + Q +FH  L  GRN
Sbjct: 139 LYQLQNDLPPHVYSVAQNAFHGILKGGRN 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,441,525
Number of Sequences: 27780
Number of extensions: 83050
Number of successful extensions: 258
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)