Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P09
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    27   0.74 
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   3.9  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    25   3.9  
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    25   3.9  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   3.9  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   5.2  

>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 27.5 bits (58), Expect = 0.74
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 181 IGNVNRWLNQGYKQVHKHHIHQMRIFDP*VMASRKDHQFLIL 56
           IGNV+  +  GY   H  H H+  + D  V    +D  ++++
Sbjct: 76  IGNVDTLIENGYIVSHHAHRHEPPVSDQPVGIVHEDESYVVI 117


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 110  AHLVNMVFMDLFVPLV 157
            AH  NM F ++F+PL+
Sbjct: 1591 AHFTNMFFTEIFIPLM 1606


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 6/26 (23%), Positives = 14/26 (53%)
 Frame = -3

Query: 178 GNVNRWLNQGYKQVHKHHIHQMRIFD 101
           G    W++  +++ H H +  M +F+
Sbjct: 277 GGKREWVSNSFRRFHSHDVRCMAVFE 302


>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 211 IICLHHLLESIGNVNRWLNQGYKQVHKHHIHQMRIFD 101
           +IC+    E+  ++N WL  GY+   + H+    I D
Sbjct: 90  LICME---EAEAHINAWLRSGYEGHMRIHVEAPTILD 123


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -3

Query: 244 LENLSRSLASHIICLHHLLESIGNVNRWLNQGYKQVH 134
           L+N++R      + +H     +GN+  W+ Q   Q +
Sbjct: 9   LQNIARQTLGKNVAVHRPPLKLGNMTNWIQQQQAQTN 45


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 310 VTSCTPLNPGSSIP*TRATRYTLENLSRSLASH 212
           VT   PLN GSS P + ++  +   L+R+  +H
Sbjct: 508 VTLKMPLNSGSSAPQSPSSNTSASVLTRNFVAH 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,641,274
Number of Sequences: 5004
Number of extensions: 32969
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)