Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P09
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0037 - 369498-369568,369668-369760,369889-369991,370061-37...    28   2.1  
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258     27   3.7  
12_02_0596 + 20888675-20888715,20889940-20890187,20890218-20890621     27   4.9  
09_02_0500 - 9950007-9950303,9950728-9951942,9952171-9952383           27   4.9  
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208...    27   4.9  
10_08_0549 + 18696903-18698330                                         27   6.5  
09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757     26   8.6  
01_06_1701 - 39290537-39291077,39292110-39292801                       26   8.6  

>06_01_0037 -
           369498-369568,369668-369760,369889-369991,370061-370156,
           370227-370293,370379-370446,370606-370681,370890-370975,
           371065-371150,371337-371409,371490-371735,371845-371937,
           372045-372119,372496-372540,372631-372708,372805-372921,
           373865-373894
          Length = 500

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 262 RATRYTLENLSRSLASHIICLHHLLESIGNVNRWLNQ 152
           RA++Y +   +  L  HI C   ++   GN+ RW+ +
Sbjct: 63  RASKYGMPITANGLRVHIHCSLFIISGQGNIARWVKK 99


>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
          Length = 874

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 310 VTSCTPLNPGSSIP*TRA-TRYTLENLSRSLASH 212
           V SC  LNP S+ P  +A T Y++E L +    H
Sbjct: 779 VLSCESLNPSSTTPAKKAKTEYSVEKLDQDGDDH 812


>12_02_0596 + 20888675-20888715,20889940-20890187,20890218-20890621
          Length = 230

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 370 TNLVLHDDLSERKQ*PGSPNVTSCTPLNPGSSI 272
           +N++L D L E+K+ PG P +TS   L    S+
Sbjct: 76  SNVIL-DKLPEKKKDPGCPTITSLCDLGASISV 107


>09_02_0500 - 9950007-9950303,9950728-9951942,9952171-9952383
          Length = 574

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 370 TNLVLHDDLSERKQ*PGSPNVTS 302
           +NL+LH  L E+K+ PG P +TS
Sbjct: 328 SNLILHK-LPEKKKDPGCPTITS 349


>02_01_0312 -
           2082614-2082677,2082815-2082945,2083041-2083129,
           2083223-2083292,2083429-2083509,2083768-2083821,
           2084864-2085067,2086272-2086366,2086976-2086997,
           2087492-2087585,2087677-2087764,2087874-2087979,
           2088103-2088189,2088261-2088309,2088418-2088521,
           2088605-2088697,2088900-2088974,2089316-2089384,
           2090182-2090250,2090339-2090374,2090471-2090565,
           2090836-2090911,2091067-2091153,2091287-2091355,
           2091654-2091731,2091836-2091925,2092436-2092642,
           2092736-2092879
          Length = 841

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 65  ELMVFPAGHDLWVKNAHLVNMVFMDLFVPLVQP 163
           E++ FPAG +L    +H ++  F  L  PLV P
Sbjct: 19  EVLDFPAGEELPAVLSHSLSSSFDFLLAPLVDP 51


>10_08_0549 + 18696903-18698330
          Length = 475

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 58  ISGIDGLSGWP*PMGQKCASGEYGVYGPVCTPGSTID 168
           +  I G++ +  P   K A GE G+  P+C PG  +D
Sbjct: 406 VGAIPGVASFLIPF--KNAKGEDGIVVPMCLPGPAMD 440


>09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757
          Length = 817

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 270 GIELPGFNGVQDVTLGEPGYCFLSERSSCRTRLVRN 377
           G+ LPGF GV           F  ERS CR  L +N
Sbjct: 163 GVRLPGFAGVTPA--------FFPERSGCRVTLYQN 190


>01_06_1701 - 39290537-39291077,39292110-39292801
          Length = 410

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -2

Query: 239 EPKSITGQSHHLPTSPIRVHWKRQSMVEPGVQTGP*TPY 123
           +P S       LPT P R H +R S   P    G   PY
Sbjct: 73  DPNSSLSVRIFLPTPPPRPHSRRASEPPPATANGGSAPY 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,657,425
Number of Sequences: 37544
Number of extensions: 212712
Number of successful extensions: 490
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)