Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_P09
(378 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 29 1.3
SB_19820| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_13166| Best HMM Match : Ank (HMM E-Value=2.9e-05) 29 1.7
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.8
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 27 3.8
SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45) 27 3.8
SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12) 27 3.8
SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28) 27 3.8
SB_44427| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_9863| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) 27 5.1
SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_38802| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 26 8.8
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_58854| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 61 SGIDGLSGWP*PMGQKCASGEYGVYGPVCTPG 156
+G GL G GQK +SG+ G GPV PG
Sbjct: 128 NGAPGLDGENGEQGQKGSSGDPGSEGPVGPPG 159
>SB_19820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 395
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 205 CLHHLLESIGNVNRWLNQGYKQVH 134
C+ HLL + GN ++ QGY VH
Sbjct: 260 CVEHLLRNRGNASKRDKQGYSAVH 283
>SB_13166| Best HMM Match : Ank (HMM E-Value=2.9e-05)
Length = 299
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 205 CLHHLLESIGNVNRWLNQGYKQVH 134
C+ HLL + GN ++ QGY VH
Sbjct: 49 CVEHLLRNRGNASKRDKQGYSAVH 72
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 61 SGIDGLSGWP*PMGQKCASGEYGVYGPVCTPG 156
SG G +G P P+G G G GP+ TPG
Sbjct: 866 SGEPGPAGPPGPLGTPGTQGAKGEPGPLGTPG 897
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 70 DGLSGWP*PMGQKCASGEYGVYGPVCTPG 156
DG G P+G+K A+G G+ G + PG
Sbjct: 1538 DGFPGIEGPLGEKGATGLPGLTGSIGVPG 1566
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 61 SGIDGLSGWP*PMGQKCASGEYGVYGPVCTPGSTI 165
+G G G P P G++ G G GP+ PGS +
Sbjct: 275 NGSPGPRGAPGPPGKRGKIGRVGPMGPIGDPGSRL 309
>SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)
Length = 577
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 64 GIDGLSGWP*PMGQKCASGEYGVYGPVCTPG 156
G+ G G P G K A GE G GP PG
Sbjct: 29 GLQGDRGEQGPFGPKGAGGEMGSKGPPGVPG 59
>SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12)
Length = 299
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 49 TKVISGIDGLSGWP*PMGQKCASGEYGVYGPVCTPG 156
T+ + G G G P P G K G+ G GP PG
Sbjct: 129 TQYVQGPPGNQGPPGPKGDKGRPGKRGRRGPAGPPG 164
>SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)
Length = 711
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 346 LSERKQ*PGSPNVTSCTPLNPGSSIP*TRATRYTLENLSRSL 221
L+E K+ P P L+P + + R+T +NLSRSL
Sbjct: 395 LTESKEVPPIPTKVPHATLSPNADVFRPRSTTLPADNLSRSL 436
>SB_44427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 347 PFGEKAIAGLS*RHVLYPVKSRELYSIDTSY 255
PF +KA + + V YP+K R LY + TSY
Sbjct: 31 PFRQKA--EIPHKSVNYPIKLRHLYDLYTSY 59
>SB_9863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 64 GIDGLSGWP*PMGQKCASGEYGVYGPVCTPG 156
G GL G P P GQ+ G+ G GP + G
Sbjct: 470 GEQGLKGDPGPQGQQGPKGDQGEQGPKGSQG 500
>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
Length = 1249
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 32 CSNECEQK*YQELM-VFPAGHDLWVK 106
C EC+ YQELM ++ H +W K
Sbjct: 895 CGQECDPPDYQELMELYELSHRIWNK 920
>SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 61 SGIDGLSGWP*PMGQKCASGEYGVYGP 141
+G G+ G P P G+K +G G GP
Sbjct: 91 TGAPGIDGQPGPQGEKGETGPQGEQGP 117
>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1169
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 70 DGLSGWP*PMGQKCASGEYGVYGPVCTPGS 159
DG +G P P G C +G Y C PG+
Sbjct: 1068 DGTTGEPCPQGTFCVTGSYEFQS--CNPGT 1095
>SB_38802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 250 YTLENLSRSLASHIICLHHLLESIGNVNRWLNQGYKQVHKH 128
Y +L R+L S C+ H + + ++ WLN ++H+H
Sbjct: 39 YLCLDLQRALES---CVSHTIPQVYDIRTWLNGYGVELHEH 76
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 64 GIDGLSGWP*PMGQKCASGEYGVYGPVCTPG 156
G DG G+P P G G G+ GP PG
Sbjct: 46 GPDGPPGFPGPQGPNGPKGPPGLPGPPGPPG 76
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 26.2 bits (55), Expect = 8.8
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +1
Query: 64 GIDGLSGWP*PMGQKCASGEYGVYGPVCTPG 156
G DGLSG P GQ +G G G TPG
Sbjct: 968 GADGLSGPPGFDGQAGETGAIGFKGEPGTPG 998
>SB_58854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 263 TSYKVYT*EPKSITGQSHHLPTSPIRVHWKRQSMVEPGVQT 141
T+ +T P T Q+ H T+P H K ++PG T
Sbjct: 69 TTQNHHTEPPYRTTPQNQHTKTTPQNQHTKTIEFLQPGGST 109
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,371,947
Number of Sequences: 59808
Number of extensions: 249483
Number of successful extensions: 693
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -