Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_P09
(378 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41748-3|AAA83336.1| 452|Caenorhabditis elegans Dumpy : shorter... 31 0.21
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 30 0.63
Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical pr... 29 0.83
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 29 1.1
Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical pr... 27 3.4
AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative acti... 27 3.4
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 27 4.5
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 27 4.5
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 27 4.5
U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protei... 27 4.5
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 27 4.5
U21318-2|AAC46668.1| 285|Caenorhabditis elegans Collagen protei... 27 5.9
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 27 5.9
AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen prot... 27 5.9
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 26 7.8
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 26 7.8
U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protei... 26 7.8
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 26 7.8
>U41748-3|AAA83336.1| 452|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 8 protein.
Length = 452
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 58 ISGIDGLSGWP*PMGQKCASGEYGVYGPVCTPGSTI 165
+ G+DG G P P G K G G YGP PG T+
Sbjct: 172 MEGVDGGPGLPGPPGPKGERGPLGPYGP---PGDTV 204
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 29.9 bits (64), Expect = 0.63
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 64 GIDGLSGWP*PMGQKCASGEYGVYGPVCTPGSTID 168
G+ GL G P P G + A G G GP PG I+
Sbjct: 186 GVPGLPGPPGPSGPQGAPGVPGEKGPTGEPGKVIN 220
>Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical
protein M110.1 protein.
Length = 499
Score = 29.5 bits (63), Expect = 0.83
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 61 SGIDGLSGWP*PMGQKCASGEYGVYGPVCTPGSTID 168
+GI G G P P G + GE G+ GP PG ++
Sbjct: 165 NGIPGRMGPPGPAGVRGPPGELGMRGPQGDPGKVLN 200
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 247 TLENLSRSLASHIICLHHLLESIGNVNRWLNQGYKQV 137
T+ENL + L+ I L E IG++NR L Q K++
Sbjct: 535 TIENLQKELSDRDILLESQNEKIGDMNRDLVQAKKRL 571
>Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical
protein F09B9.2b protein.
Length = 639
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 233 KSITGQSHHLPTSPIRVHWKRQSMVEPGVQ 144
K +H+P PI++ R SM++ G+Q
Sbjct: 296 KEPNAPQYHVPQGPIKIRKSRMSMLKTGMQ 325
>Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical
protein F09B9.2a protein.
Length = 625
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 233 KSITGQSHHLPTSPIRVHWKRQSMVEPGVQ 144
K +H+P PI++ R SM++ G+Q
Sbjct: 282 KEPNAPQYHVPQGPIKIRKSRMSMLKTGMQ 311
>AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative
actin-binding proteinUNC-115 protein.
Length = 639
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 233 KSITGQSHHLPTSPIRVHWKRQSMVEPGVQ 144
K +H+P PI++ R SM++ G+Q
Sbjct: 296 KEPNAPQYHVPQGPIKIRKSRMSMLKTGMQ 325
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 64 GIDGLSGWP*PMGQKCASGEYGVYGPVCTPGS 159
G D G P P G +GE G GP PG+
Sbjct: 177 GTDAAPGSPGPRGPPGPAGEAGAPGPAGEPGT 208
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 64 GIDGLSGWP*PMGQKCASGEYGVYGPVCTPGST 162
G+DGL G P G+ + G+YG+ G PG +
Sbjct: 1029 GLDGLPGAPGLNGEPGSPGQYGMPGLPGGPGES 1061
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 64 GIDGLSGWP*PMGQKCASGEYGVYGPVCTPGST 162
G+DGL G P G+ + G+YG+ G PG +
Sbjct: 1286 GLDGLPGAPGLNGEPGSPGQYGMPGLPGGPGES 1318
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 64 GIDGLSGWP*PMGQKCASGEYGVYGPVCTPGST 162
G+DGL G P G+ + G+YG+ G PG +
Sbjct: 1285 GLDGLPGAPGLNGEPGSPGQYGMPGLPGGPGES 1317
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 64 GIDGLSGWP*PMGQKCASGEYGVYGPVCTPGS 159
G G++G+P P G G+ G+ G PGS
Sbjct: 551 GFPGMNGYPGPPGPNGDHGDCGMPGAPGKPGS 582
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 64 GIDGLSGWP*PMGQKCASGEYGVYGPVCTPGS 159
G D G P P G +GE G GP PG+
Sbjct: 172 GTDAAPGSPGPRGPPGPAGEAGAPGPAGEPGT 203
>U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protein
58 protein.
Length = 305
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 58 ISGIDGLSGWP*PMGQKCASGEYGVYGPVCTPG 156
I+G GL G P G GE G+ GPV PG
Sbjct: 180 ITGAPGLDGIPGRHGTPGYPGEPGLPGPVGDPG 212
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 64 GIDGLSGWP*PMGQKCASGEYGVYGPVCTPGS 159
G D G P P G +GE G GP PG+
Sbjct: 172 GTDAAPGSPGPRGPPGPAGEAGAPGPAGEPGT 203
>U21318-2|AAC46668.1| 285|Caenorhabditis elegans Collagen protein
75 protein.
Length = 285
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 52 KVISGIDGLSGWP*PMGQKCASGEYGVYGPVCTPG 156
K I G G+ GWP G + +GE G G PG
Sbjct: 141 KGIDGPPGIPGWPGEPGVRGMNGERGSTGLDGAPG 175
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 64 GIDGLSGWP*PMGQKCASGEYGVYGPVCTPG 156
G+DG G P G K GE G GP PG
Sbjct: 114 GLDGPRGLPGTPGSKGDRGERGPLGPPGFPG 144
>AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen protein
104 protein.
Length = 281
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +1
Query: 58 ISGIDGLSGWP*PMGQKCASGEYGVYGPVCTPG 156
+ GI G SG P G A G G GP TPG
Sbjct: 233 VPGIQGSSGGPGEDGAPGAPGFDGQQGPSGTPG 265
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 26.2 bits (55), Expect = 7.8
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 58 ISGIDGLSGWP*PMGQKCASGEYGVYGPVCTPG 156
I G +G G P G A GE G GP+ PG
Sbjct: 151 IPGDNGPPGEQGPKGPDAAPGEPGPKGPIGPPG 183
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 26.2 bits (55), Expect = 7.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 64 GIDGLSGWP*PMGQKCASGEYGVYGPVCTPG 156
G+ G+ G P G+ G G+ GP PG
Sbjct: 193 GLKGMPGIPGNQGEDAGPGRQGMPGPTGPPG 223
>U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protein
175 protein.
Length = 287
Score = 26.2 bits (55), Expect = 7.8
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 64 GIDGLSGWP*PMGQKCASGEYGVYGPVCTPGS 159
G G +G P P G+ GE G G V TPG+
Sbjct: 184 GEPGETGGPGPQGRPGQRGEPGQPGTVHTPGN 215
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 26.2 bits (55), Expect = 7.8
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 64 GIDGLSGWP*PMGQKCASGEYGVYGPVCTPG 156
G G SG P P G A G+ G G TPG
Sbjct: 202 GTPGASGRPGPQGPAGAPGQPGRSGGAGTPG 232
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,047,991
Number of Sequences: 27780
Number of extensions: 183856
Number of successful extensions: 814
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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