Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P08
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   2.2  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   2.9  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    26   2.9  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   3.8  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   6.7  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   6.7  

>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 86  CRLRLRYGDRFGGAVESLLGIGQSWPENERRSHK 187
           C LRL+      G +E LL   QS  E +  SHK
Sbjct: 308 CSLRLKELQNSNGELEKLLEAAQSSFEEQLESHK 341


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 410 HITLLLQTY-IVHILVYFSDTFYKGIKI*IQNYMYIGYT 297
           H+ +L Q   ++ I+  F + ++KG+   I ++ +IG+T
Sbjct: 343 HLKVLQQLRPLIDIVEKFMNVYFKGLSNIISSFAFIGFT 381


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 199 PSLQWPRPRLWLKENNH 249
           PS++W  PR WLK   +
Sbjct: 192 PSVKWRMPRFWLKRRTN 208


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 292 GDYINMRKYMKKLMNDYF 239
           G ++N+R Y++K MN+ F
Sbjct: 371 GKFLNLRSYIRKSMNNVF 388


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 236 FSQSRGLGHCSDGWTST 186
           F  +  L HCSDGW  T
Sbjct: 333 FRHAHVLVHCSDGWDRT 349


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 426 LKVLNTYNLITADIYCTYSC 367
           LKV N +N+    +YC + C
Sbjct: 32  LKVRNAWNVTNGHVYCIHLC 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,811
Number of Sequences: 5004
Number of extensions: 37150
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)