Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P08
         (434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0222 + 26510472-26511698                                         27   5.0  
05_01_0395 + 3118480-3119097,3119699-3119989,3120063-3120114,312...    27   5.0  
11_02_0083 - 8116997-8117590,8118342-8118745,8119073-8119671,812...    27   8.7  
06_01_1116 + 9197761-9199956                                           27   8.7  

>05_06_0222 + 26510472-26511698
          Length = 408

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +1

Query: 214 PRPRL-WL---KENNHSLTFSCIFSCLYNHHLVYP 306
           P P++ WL   + N H LTFSC+ S    H    P
Sbjct: 56  PHPQVPWLLLPETNEHGLTFSCVLSECRAHRFFLP 90


>05_01_0395 +
           3118480-3119097,3119699-3119989,3120063-3120114,
           3120395-3120546
          Length = 370

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 212 HCSDGWTSTYDCVSHSLANFVQFLEGIPRRRRNGPHSEDASDNRQNNFSEI 60
           HCS G  ++   V+ +   F+Q L+  PRR +  PH    SD  + + S +
Sbjct: 194 HCSSGCINSL--VAEARIKFLQLLDHPPRRDQPPPHLCLGSDRARTHPSSL 242


>11_02_0083 -
           8116997-8117590,8118342-8118745,8119073-8119671,
           8120226-8120266
          Length = 545

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
 Frame = -1

Query: 218 LGHCSD-------GWTSTYDCVSHSLANFVQFLEGIPRRRR 117
           L HC D       GWT  ++ V      FV+F+   P+ R+
Sbjct: 244 LNHCPDAPYCDRNGWTCLHEAVKEGQTEFVEFILRTPQLRK 284


>06_01_1116 + 9197761-9199956
          Length = 731

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 155 SWP-ENERRSHKCWSSRRYSGPGHGFG*RKIII 250
           SWP ENER   KC     +S   H +   +III
Sbjct: 621 SWPMENERNKEKCNQEFHFSIEEHFYSSHQIII 653


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,713,982
Number of Sequences: 37544
Number of extensions: 221074
Number of successful extensions: 473
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)