Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P07
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   1.7  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   2.9  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   6.7  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   6.7  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.8  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   8.8  

>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 314 LPVHSIGSSKLRLCRGSTLSHSFSRTHMPLLF 219
           LPV  +GSS + L  G  LSHS S +H  +++
Sbjct: 71  LPVTHVGSSFVEL--GQALSHSSSNSHTYIMY 100


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -3

Query: 327  VKLIFTGTFYWIIKIALVPRLNSVTFILANTYAIIVSNKTFFANTFYLTFLVMNATEFYI 148
            V L+F  T ++   IA     NS+  IL+  Y I +  K +  + +Y      N  +  +
Sbjct: 1280 VHLLFLLTIFYPCPIAYTYVRNSIFLILSICYTINICVKVYGLSFYYFFHSFWNMFDVVV 1339

Query: 147  TI 142
            T+
Sbjct: 1340 TL 1341


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/36 (25%), Positives = 23/36 (63%)
 Frame = -1

Query: 167 MQLNFISRFLQVLSGGQATTQSDFSLVPLHFNSCVL 60
           ++++ +SR +++L GG+ +++   +L+PL      L
Sbjct: 172 LEIDQLSRLVEILEGGEISSEILDTLLPLEIEDLAL 207


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -3

Query: 468 VCTRYSHLWRILRTIPFSVAHKIKNWPMGSVLFRQFRADIITG 340
           V TR+SH    LR  P +VAH IKN  + S  +   +  I  G
Sbjct: 291 VSTRFSHE---LRLKPVAVAHGIKNSEIASCNYEARKFGIKNG 330


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
 Frame = -1

Query: 503 LLNGWIFTLFDGYAHVILISGVSFVPYHFLW-HIKLRIGQWVLFCSGNSEQTLS---QAG 336
           L+ G + T+F GY  V       FVP   LW ++  R     +       +T++   Q  
Sbjct: 400 LILGVLHTVFSGYTTVWCPQNAVFVP--GLWANLATRYRASFMLTDYAGLKTIAYNYQND 457

Query: 335 PHM*NSFLPVHSIGSSKLRLC 273
           P     F   HS+  S LR+C
Sbjct: 458 PKATLGFSKKHSVDLSSLRMC 478


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 303 FYWIIKIALV-PRLNSVTFILANTYAIIVSNKTFFA 199
           F W + + L+   + ++ F + +TY I   NKTF A
Sbjct: 100 FCWTVLLPLIFKHVWNLNFKIGDTYTIHARNKTFTA 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,443
Number of Sequences: 5004
Number of extensions: 62200
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)