Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_P07
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0317 + 33097257-33097336,33098500-33098926,33100007-331000... 29 2.3
08_02_0393 + 16621137-16621139,16621392-16621583,16622559-166226... 29 3.0
07_03_0630 - 20097672-20097772,20097983-20102012 29 3.9
07_01_0616 + 4560866-4560952,4561144-4561208,4564481-4564913,456... 29 3.9
02_01_0552 + 4074001-4074341,4075118-4075257,4075647-4075838,407... 29 3.9
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 28 5.2
02_01_0071 - 496936-497158,497231-497352,497918-497966,498141-49... 28 5.2
08_02_0721 + 20401217-20401360,20401689-20401809,20401969-204020... 28 6.9
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548... 28 6.9
02_03_0069 - 14728968-14729368,14729434-14729800,14730099-14730149 28 6.9
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 28 6.9
>03_06_0317 +
33097257-33097336,33098500-33098926,33100007-33100078,
33100490-33100600,33100973-33101173,33102157-33102222
Length = 318
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 88 TNEKSDCVVACPPERTCKNRDIKFSCIHDQKCQ 186
T+E+SD VV CPP+ +R+ S + CQ
Sbjct: 38 TDEESDGVVICPPDGNNDDREEAISSNNHDNCQ 70
>08_02_0393 +
16621137-16621139,16621392-16621583,16622559-16622612,
16623041-16623160,16623280-16623501,16623594-16623650,
16623993-16624046,16624395-16624426,16624888-16625023,
16625108-16625278,16625430-16625661,16626018-16626022
Length = 425
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/64 (23%), Positives = 33/64 (51%)
Frame = -1
Query: 518 FNVAFLLNGWIFTLFDGYAHVILISGVSFVPYHFLWHIKLRIGQWVLFCSGNSEQTLSQA 339
F+ LL +I+ + + + +I++ +SF P+ + ++ + L+C N+E
Sbjct: 87 FHTLSLLGYFIYNVLEIF--IIIVCSISFSPFLDVSCSEVAYATFQLYCVRNNEVQRLML 144
Query: 338 GPHM 327
GPH+
Sbjct: 145 GPHL 148
>07_03_0630 - 20097672-20097772,20097983-20102012
Length = 1376
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 358 SELPEQNRTHWPILNFMCHRK 420
S P N TH P+ NF+C+ K
Sbjct: 624 SHQPSNNETHLPLSNFLCNSK 644
>07_01_0616 +
4560866-4560952,4561144-4561208,4564481-4564913,
4565634-4565786,4565875-4565946,4567602-4567712,
4568344-4568584,4568743-4568821,4568892-4569018
Length = 455
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 88 TNEKSDCVVACPPERTCKNRDIKFSCIHDQ 177
T+++SDCVV CPP + ++ S HD+
Sbjct: 62 TDDESDCVVICPPNGKAGHTEV-MSGRHDE 90
>02_01_0552 +
4074001-4074341,4075118-4075257,4075647-4075838,
4077211-4077518
Length = 326
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -2
Query: 379 CSVQAIQSRHYHRRARTCKTH--FYRYILLDHQNCACAAAQLCH 254
C V+ + + YHR+ R C+ H F R ++ + C H
Sbjct: 73 CGVELVGVKDYHRKHRVCEAHSKFPRVVVAGQERRFCQQCSRFH 116
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 518 FNVAFLLNGWIFTLFDGYAHVILISGVSFVPYHFLWHIKLRIGQWVLFCS 369
F +LL G+I F G + L S S+ +H LWHI + + CS
Sbjct: 821 FRWFYLLLGFITLAFAGTSWK-LESNRSYWVWHSLWHITIYTSSFFFLCS 869
>02_01_0071 -
496936-497158,497231-497352,497918-497966,498141-498211,
498368-498454,498660-498740,498838-498901,498994-499057,
499246-499444,499916-500134
Length = 392
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 418 KWYGTKDTPEMRITCAYPSNSVKIQPFNKNATL 516
KW ++ TP++ T N+V I P KNAT+
Sbjct: 269 KWNQSEGTPQVAYTFDAGPNAVLIAPNRKNATI 301
>08_02_0721 +
20401217-20401360,20401689-20401809,20401969-20402067,
20402790-20402851,20403680-20403797,20404004-20404343,
20404435-20404582,20405043-20405144,20405240-20405359,
20405812-20405895,20405974-20406101,20408314-20408389,
20408556-20408631,20408800-20408876,20408975-20409031,
20409411-20409555,20409634-20409806,20409928-20410054,
20410090-20410192,20410492-20410688,20410946-20411097
Length = 882
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 305 VPVKMSFTCAGPPVIMSALNCLNRTEPIGQFLILCATE 418
V +S A P + + +C+N +P+ Q ++LC E
Sbjct: 715 VEAVLSSLAANVPKLSMSASCINIIDPVEQAVVLCQVE 752
>06_03_1508 -
30653967-30654245,30654342-30654631,30654773-30654841,
30654854-30654921,30655016-30655492,30655578-30655874,
30655974-30656824,30656917-30656990,30657270-30657292,
30657709-30657772,30658098-30658370,30658511-30658587,
30658686-30658912
Length = 1022
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Frame = +1
Query: 124 PERT--CKNRDIKFSCIHDQKCQIKC----VCKEGFIRNNNGICVRENECDRVEPRHK 279
P RT C+ F C H C I C C E + GIC + + + HK
Sbjct: 169 PSRTLDCRGCCAGFFCPHGLTCMIPCPLGAYCPESTLNKTTGICDPKGSTSQTKCFHK 226
>02_03_0069 - 14728968-14729368,14729434-14729800,14730099-14730149
Length = 272
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 340 ACDNVCSELPEQNRTHWPILNFMCHRKWYGTKDTP 444
A N+ E PE++ + P++ MC W TKD P
Sbjct: 145 ATHNMAWEEPEESTSSPPVM--MCEADWAPTKDAP 177
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 269 GSTLSHSFSRTHMPLLFLIKPSLQTH 192
G+ LSHSFSR L+F + SL H
Sbjct: 198 GAELSHSFSRNESTLIFGSQHSLDPH 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,558,107
Number of Sequences: 37544
Number of extensions: 393564
Number of successful extensions: 1019
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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