Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P06
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    31   0.079
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    27   2.2  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    26   3.0  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    26   3.9  

>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 31.5 bits (68), Expect = 0.079
 Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
 Frame = -1

Query: 386 PAQDILPPTLALHARYTFC-LISPVIKQPKHKSMNLKAAIQALTMMN--IICNFSIHIRR 216
           P+ D+    ++   +Y    +I P++KQ  HK  NL +    L+++   + C   ++I+R
Sbjct: 354 PSFDVFSRLMSALVKYNMTEMILPLVKQYDHKFRNLYSPNIFLSIVQALVFCGDMVNIQR 413

Query: 215 KWITLSNITIERSDPRYIV 159
            W  +S +  E S  ++++
Sbjct: 414 -WYNMSRVNSELSRIKHLL 431


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 435 RFLSDYDLCIHNILETVPPKPT 500
           RF SDY  CI+N    V  KPT
Sbjct: 700 RFKSDYRSCIYNARRNVFSKPT 721


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 211 HFRLIWIEKLQMIFIIVSACMAALRFMLLCLGC 309
           HFRLI +EK+  +FI     M    F L C+ C
Sbjct: 45  HFRLITVEKID-VFI---NAMVPSTFALFCMAC 73


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 121 LLCVVRAWECFSGTMYRGSDLSIVMFDKVIHFRLIWIEKLQMIFIIVSACMAAL 282
           L+CV   W CF   MY      +  F + + F    +   Q+  + +S C AAL
Sbjct: 311 LICVAAGWACFGIWMY-----YLWQFLENLRFATPLLVTAQLTPVGISGCAAAL 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,955
Number of Sequences: 5004
Number of extensions: 44882
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)