Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P06
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676...    28   4.0  
05_03_0560 + 15468430-15468437,15468971-15469052,15469132-154692...    27   9.1  

>03_05_0937 -
           28967038-28967245,28967348-28967556,28967584-28967644,
           28967926-28968742,28968960-28971024
          Length = 1119

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 411 KLYMDPSTRFLSDYDLCIHNILETVPP 491
           KL MD  TR   DY   IHN    +PP
Sbjct: 741 KLVMDKFTRVEGDYKAIIHNPSPLIPP 767


>05_03_0560 +
           15468430-15468437,15468971-15469052,15469132-15469218,
           15469604-15469788,15470047-15470050
          Length = 121

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 498 SVLEAQFPKYCEYKGRNH*ET 436
           S+ EAQ P YC    RNH  T
Sbjct: 78  SISEAQLPSYCRMPYRNHPST 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,825,719
Number of Sequences: 37544
Number of extensions: 271019
Number of successful extensions: 599
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)