Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P06
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    27   0.50 
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   2.7  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   6.2  

>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 26.6 bits (56), Expect = 0.50
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 178 DLSIVMFDKVIHFRLIWIEKLQMIFI-IVSACMAALRFMLLCLGCLITGDIRQKVYRAWR 354
           +LS  + D +    L W+      F+  ++A +  L F +    CL+  +    +YRA R
Sbjct: 437 ELSKHVLDVIYSQTLCWLGTFYAPFLPAIAALLTFLMFYIKKFACLVNSNPSAILYRASR 496

Query: 355 AK 360
           +K
Sbjct: 497 SK 498


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 471 ILETVPPKPTNI 506
           ILE +PPKP+N+
Sbjct: 239 ILECIPPKPSNL 250


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -1

Query: 149  HSHALTTHNSRYKSCMRHSC*KSLTSITH 63
            H + +  + S YK   +HS  ++   +TH
Sbjct: 3100 HDNTIQRYKSHYKRTSKHSMIENCYPVTH 3128


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 555,527
Number of Sequences: 2352
Number of extensions: 11054
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)