Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P04
         (380 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0047 + 12787845-12788004,12788297-12788940                       27   5.0  
06_01_1116 + 9197761-9199956                                           27   6.6  
10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886     26   8.7  
05_07_0027 + 27140626-27141457,27143101-27143901,27144838-271448...    26   8.7  

>11_04_0047 + 12787845-12788004,12788297-12788940
          Length = 267

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 300 LYKHEKIHKKVNE*LFSFSQSRGLGHCSDGWTSTYDC 190
           L K+EK  K+++  L S   +  LG  S+  T+T DC
Sbjct: 211 LAKYEKEKKQMSNSLPSDGDNTNLGASSESMTATVDC 247


>06_01_1116 + 9197761-9199956
          Length = 731

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 168 SWP-ENERRSHKCWSSRRYSGPGHGFG*RKIII 263
           SWP ENER   KC     +S   H +   +III
Sbjct: 621 SWPMENERNKEKCNQEFHFSIEEHFYSSHQIII 653


>10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886
          Length = 334

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 144 RRRRNGPHSEDASDNQQN 91
           RRRR  PH ED  D  +N
Sbjct: 120 RRRRRDPHREDDGDRHRN 137


>05_07_0027 +
           27140626-27141457,27143101-27143901,27144838-27144873,
           27145133-27145420,27145836-27146289,27146520-27146964
          Length = 951

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 222 CSDGWTSTYDCVSHSLANFQFLEGIP 145
           CSDG  S  DCV H+      L  +P
Sbjct: 267 CSDGHVSKTDCVHHTFEKMHPLCSLP 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,337,217
Number of Sequences: 37544
Number of extensions: 166648
Number of successful extensions: 382
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)