Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P04
         (380 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.8  
SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)                     26   9.0  

>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 273 FYVFSHVYIITFFVSYIHIILDSYFYT 353
           FY++ ++YI  +   YI+I   +Y YT
Sbjct: 9   FYIYIYIYIYIYIYIYIYIYTYTYTYT 35



 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 255 IIIH*LFYVFSHVYIITFFVSYIHIILDSYFYT 353
           I I+   Y++ ++YI T+  +Y +    +Y YT
Sbjct: 13  IYIYIYIYIYIYIYIYTYTYTYTYTYTYTYTYT 45


>SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 297 IITFFVSYIHIILDSYFYTL 356
           ++  F SYIH +L+ Y Y+L
Sbjct: 898 LVVGFCSYIHAVLNGYLYSL 917


>SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 347

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +2

Query: 242 WLKENNHSLTFLCIFSCLYNHIFCIIY 322
           WLK+N       C+  C   H  C +Y
Sbjct: 38  WLKQNCKKTCDFCVKPCFDKHTKCAVY 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,797,981
Number of Sequences: 59808
Number of extensions: 184564
Number of successful extensions: 512
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)