Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P04
         (380 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens ...    32   0.71 
AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    29   3.8  
AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens ...    29   6.6  
BC016950-1|AAH16950.1|   75|Homo sapiens KLHL23 protein protein.       28   8.7  

>AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42815 fis, clone BRCAN2014143. ).
          Length = 189

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 8/41 (19%)
 Frame = +2

Query: 260 HSLTFLCIFS--CLYNHIF---CI---IYTYNS*FIFLYPY 358
           H+  ++C++   C+Y H++   CI   +YTY   +I +YPY
Sbjct: 2   HTYIYMCVYPYICIYMHVYPCICIYLHVYTYICMYIHIYPY 42


>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 255 IIIH*LFYVFSHVYIITFFVSYIHIILDSYFYTLIKCITEI 377
           I ++  FY+F+++Y+  F   YI+I L  Y Y  +   T I
Sbjct: 33  IYLYIYFYIFTYIYLYIFI--YIYICLYIYLYIYLYIFTYI 71


>AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46559 fis, clone THYMU3040126. ).
          Length = 303

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 261 IH*LFYVFSHVYIITFFVSYIHIILDSYFYTLIKCITEIN 380
           I+   YV++H YI T+   Y+ I   +Y +T +     I+
Sbjct: 13  IYTCIYVYTHTYIYTYTCMYVCIYSHTYIHTHVYVCVHIH 52


>BC016950-1|AAH16950.1|   75|Homo sapiens KLHL23 protein protein.
          Length = 75

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 269 TFLCIFSCLYNHIFCIIYTYNS*FIFLY 352
           T +CI  C+Y ++   IYTY   ++++Y
Sbjct: 41  TCVCIHICVYIYMCVYIYTYIRIYVYIY 68


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,196,697
Number of Sequences: 237096
Number of extensions: 916230
Number of successful extensions: 6197
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6173
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2526356360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)