Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P04
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032630-13|CAA21568.1|  348|Caenorhabditis elegans Hypothetical...    30   0.49 
AC199240-1|ABO33278.1|  427|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U70852-4|AAK29816.2|   93|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AF022968-5|AAB69885.2| 1080|Caenorhabditis elegans Adenylyl cycl...    26   7.9  

>AL032630-13|CAA21568.1|  348|Caenorhabditis elegans Hypothetical
           protein Y62H9A.13 protein.
          Length = 348

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -3

Query: 279 HKKVNE*LFSFSQSRGLGHCSDGWTSTYDCVSHSLANFQFLEG--IPRRRRNGP 124
           + ++NE +  FS +   GH +    + YD V HSL+N Q  E   +PR  R  P
Sbjct: 197 YDEINE-VPRFSDNPVFGHLNLPEVTIYDAVFHSLSNVQTTESYTLPRELRTWP 249


>AC199240-1|ABO33278.1|  427|Caenorhabditis elegans Hypothetical
           protein 2L52.1 protein.
          Length = 427

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 171 NFQFLEGIPRRRRNGPHSEDASDNQQNNFSE 79
           N +F EG  RRR+N   SED   ++  NF+E
Sbjct: 313 NNKFREGTRRRRKNSGESEDLKIHE--NFTE 341


>Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical
           protein M28.8 protein.
          Length = 831

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 189 VSHSLANFQFLEGIPRRRRNGPHSEDASDNQQNNF 85
           VS +L+N QF+  +     N P++   + NQ NN+
Sbjct: 584 VSDALSN-QFITNLQTLAANAPNTTSIAKNQNNNY 617


>U70852-4|AAK29816.2|   93|Caenorhabditis elegans Hypothetical
           protein F45E4.5 protein.
          Length = 93

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 204 WSSRRYSGPGHGF 242
           W   RYS PGHGF
Sbjct: 40  WGRPRYSPPGHGF 52


>AF022968-5|AAB69885.2| 1080|Caenorhabditis elegans Adenylyl cyclase
           protein 2 protein.
          Length = 1080

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +2

Query: 212 PSLQWPRPRLWLKENNHS---LTFLCIFSCLYNHIFCIIY 322
           P L WP  R  +  N      LTF+CI S   N + C +Y
Sbjct: 598 PKLLWPFSRKSITCNLSDCVLLTFVCIPSAFANLLLCSLY 637


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,575,636
Number of Sequences: 27780
Number of extensions: 148059
Number of successful extensions: 570
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)