Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P02
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589...    30   1.7  
06_01_0993 + 7710016-7710977,7711081-7711316,7711422-7711501,771...    29   3.0  
02_01_0666 - 4954135-4954320,4954875-4955003,4955504-4955518           28   5.3  

>03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,
            5890540-5890710,5890840-5891007,5891139-5891234,
            5891777-5891839,5891949-5892114,5892207-5892274,
            5892646-5892789,5893111-5893176,5893329-5893520,
            5894567-5894657,5895241-5895329,5895521-5895583,
            5895698-5895823,5895902-5895991,5896059-5896181,
            5896503-5896619,5896704-5896904,5897643-5897723,
            5897897-5897977,5898083-5898184,5898264-5898488,
            5898571-5898726,5898798-5899010,5899306-5899455,
            5900082-5900204,5900299-5900364,5900555-5900620,
            5900686-5900817,5900891-5900965,5901355-5901438,
            5901516-5901668,5901741-5901806,5902044-5902205,
            5902272-5902388,5902495-5902566,5902702-5902761,
            5902869-5902985,5904131-5904430,5904518-5904622,
            5905710-5905775,5905853-5906297,5906399-5906567,
            5906684-5906736,5906819-5906925
          Length = 1981

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +1

Query: 295  KFIHIGPVVFKYSLHTKIQVFPLCNISIDKF*HRFAQSPVTTNFFRIALLISPELDIWR 471
            +F H+G VV +Y     +  FP  N+S          SP+T    ++ LLI+PE  +WR
Sbjct: 1122 RFSHLGKVVKQY-----VGYFPYVNLSA-------TVSPITRTVLKVDLLITPEF-LWR 1167


>06_01_0993 +
           7710016-7710977,7711081-7711316,7711422-7711501,
           7711977-7712072,7712995-7713892,7713983-7714093,
           7714657-7714751
          Length = 825

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 188 LLITSCCPRLYPRSSHFPTGIKTLCHSLDIKLSPYENSSISV 313
           LL+ S     Y  S  + +  +  CH L IKL P  NS I++
Sbjct: 447 LLLDSLTKLNYNPSEWYKSCSEVNCHPLSIKLDPISNSRINI 488


>02_01_0666 - 4954135-4954320,4954875-4955003,4955504-4955518
          Length = 109

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 188 LLITSCCPRLYPRSSHFPTGIKTLCHSLDIKLSPYENSSIS-VQ*FLSIRYIQK 346
           L +T+C P    ++SH P     +C+S D     Y N S + V   LS+  I+K
Sbjct: 54  LRVTACSPARRSKASHVPDVAPVVCNSGDNDGDGYNNRSWALVMKLLSVIGIRK 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,972,536
Number of Sequences: 37544
Number of extensions: 320857
Number of successful extensions: 491
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)