Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P02
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68116-11|CAA92176.1|  317|Caenorhabditis elegans Hypothetical p...    28   4.8  
Z68114-12|CAA92163.1|  317|Caenorhabditis elegans Hypothetical p...    28   4.8  
U41038-2|AAX88827.1|  635|Caenorhabditis elegans Serotonin/octop...    28   4.8  
U41038-1|AAK29709.2|  683|Caenorhabditis elegans Serotonin/octop...    28   4.8  
AF031415-1|AAC15778.1|  635|Caenorhabditis elegans serotonin rec...    28   4.8  
AF031414-1|AAC15827.1|  683|Caenorhabditis elegans serotonin rec...    28   4.8  

>Z68116-11|CAA92176.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.8 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 116 LCITFVYLI*ILFYMLNSIFLY*FLLITSCCPRLYPRSSHFPTGIKTLCHSLDIKLSPY 292
           LC   + +  I+ +   ++     +L+T+CC +L   S  F T I+ + H + I+L  Y
Sbjct: 18  LCFQIILIYTIIRHSPKNLSTLKAILLTNCCFQLLQSSMVFFTQIQLVNHLVPIELWSY 76


>Z68114-12|CAA92163.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.8 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 116 LCITFVYLI*ILFYMLNSIFLY*FLLITSCCPRLYPRSSHFPTGIKTLCHSLDIKLSPY 292
           LC   + +  I+ +   ++     +L+T+CC +L   S  F T I+ + H + I+L  Y
Sbjct: 18  LCFQIILIYTIIRHSPKNLSTLKAILLTNCCFQLLQSSMVFFTQIQLVNHLVPIELWSY 76


>U41038-2|AAX88827.1|  635|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 1, isoform b
           protein.
          Length = 635

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 129 LYI*FEYYFIC*TPYFFIDF 188
           L + F  +FIC TP+FFI+F
Sbjct: 326 LAVVFACFFICWTPFFFINF 345


>U41038-1|AAK29709.2|  683|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 1, isoform a
           protein.
          Length = 683

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 129 LYI*FEYYFIC*TPYFFIDF 188
           L + F  +FIC TP+FFI+F
Sbjct: 374 LAVVFACFFICWTPFFFINF 393


>AF031415-1|AAC15778.1|  635|Caenorhabditis elegans serotonin
           receptor protein.
          Length = 635

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 129 LYI*FEYYFIC*TPYFFIDF 188
           L + F  +FIC TP+FFI+F
Sbjct: 326 LAVVFACFFICWTPFFFINF 345


>AF031414-1|AAC15827.1|  683|Caenorhabditis elegans serotonin
           receptor protein.
          Length = 683

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 129 LYI*FEYYFIC*TPYFFIDF 188
           L + F  +FIC TP+FFI+F
Sbjct: 374 LAVVFACFFICWTPFFFINF 393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,488,048
Number of Sequences: 27780
Number of extensions: 310335
Number of successful extensions: 463
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)