Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P02
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.4  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   7.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.8  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 89  YPTPLDFFM-LCITFVYLI*ILFYMLNSIFLY 181
           YPT LDFF+ L   F++   I F +++    Y
Sbjct: 272 YPTALDFFVFLSFAFIFATIIQFAVVHYFTKY 303


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 116 LCITFVYLI*ILFYMLNSIF 175
           LCI+ VY+I ++ ++  +I+
Sbjct: 403 LCISLVYIIMLIIFIPRNIY 422


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 391 VKIYLC*YYKEERLVF 344
           + +YL  Y+K+ERL F
Sbjct: 84  ITMYLNQYWKDERLAF 99


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 195 LLAAVRGFTRVVPISQPE*KPYVIPSISNYLHTKIHPYRS 314
           L+   +  T +VP +Q   KP+    + N   T IH   S
Sbjct: 75  LMCVEKVSTTIVPTTQEINKPFKRLELFNITTTTIHSIHS 114


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 377 MLILQRGKTCIFVCNE 330
           M+  Q+G TC +VC++
Sbjct: 457 MIKKQQGDTCCWVCDQ 472


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 377 MLILQRGKTCIFVCNE 330
           M+  Q+G TC +VC++
Sbjct: 547 MIKKQQGDTCCWVCDQ 562


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 150 YFIC*TPYFFIDFY 191
           +FIC TPY+ +  +
Sbjct: 269 FFICWTPYYVMSLW 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,592
Number of Sequences: 438
Number of extensions: 4573
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)