Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P01
         (388 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310...    55   2e-08
08_01_0397 - 3509186-3510291,3510322-3512335                           51   4e-07
07_03_0820 - 21749477-21749866,21751192-21751590                       29   1.7  
05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705     27   3.9  
05_03_0050 + 7809267-7809481,7809545-7809767,7810230-7810297,781...    27   5.2  
05_06_0250 - 26682207-26683811                                         26   9.1  
05_04_0200 + 18986183-18986330,18986434-18986513,18987237-189874...    26   9.1  

>08_01_0353 -
           3107628-3107774,3108177-3108213,3108248-3109164,
           3109210-3110952
          Length = 947

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 27/63 (42%), Positives = 38/63 (60%)
 Frame = +3

Query: 117 VMFKEALALISEYSEAGITVRGTYVXXXXXXXXXXRKLYLAIESSQELAVAKAKSEITRL 296
           +  KE L  I +++EA IT RGT++          RKLYL IE   EL+V KAKSE+ R+
Sbjct: 809 ITHKETLGPIQDWTEAAITTRGTFIPQGKIVGANERKLYLFIEGPTELSVKKAKSELKRV 868

Query: 297 ITE 305
           + +
Sbjct: 869 LED 871


>08_01_0397 - 3509186-3510291,3510322-3512335
          Length = 1039

 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 26/63 (41%), Positives = 36/63 (57%)
 Frame = +3

Query: 117  VMFKEALALISEYSEAGITVRGTYVXXXXXXXXXXRKLYLAIESSQELAVAKAKSEITRL 296
            +  KE L  I E++ A IT RGT+           RKLYL IE   EL+V KAK+E+ R+
Sbjct: 957  ITHKETLGPIQEWTGAAITTRGTFFPQGKIVGANERKLYLFIEGPTELSVKKAKAELKRV 1016

Query: 297  ITE 305
            + +
Sbjct: 1017 LED 1019


>07_03_0820 - 21749477-21749866,21751192-21751590
          Length = 262

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = +1

Query: 148 ASTRKPASRSGALTYRPGS---RRPTANGNSI*--L*RAPRNWPWPKPSPKSHGS*RKNF 312
           A++R P +R   L  R  +     P+++ +S    L R P  WP P P P      R+ F
Sbjct: 3   AASRAPLARRSLLLLRYKALPLSSPSSSSSSTHSLLPRPPALWPPPPPPPPHGCERRRAF 62

Query: 313 *NYRPQHITWSTKQ 354
            + RP+   W +K+
Sbjct: 63  HDGRPRGPLWRSKK 76


>05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705
          Length = 265

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 230 EFPLAVGRRLPGRYVSAPDRDAG 162
           E  LAV R  PGR+V+A +R AG
Sbjct: 58  ELILAVPRASPGRHVAAKERKAG 80


>05_03_0050 +
           7809267-7809481,7809545-7809767,7810230-7810297,
           7811979-7812131,7812188-7812380
          Length = 283

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 302 GRTFETTDLSTSHGRQSKIYRFIISPIII 388
           G + E   L  SHG++SK++ F    +++
Sbjct: 185 GDSLEDLSLQVSHGKRSKVWEFFEQDLVV 213


>05_06_0250 - 26682207-26683811
          Length = 534

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 378 GEMIKRYILLCRPCDVLRSVVSKVLP 301
           G + +R+  LCR  D L  +VS VLP
Sbjct: 70  GALSRRWASLCRGLDALDFLVSDVLP 95


>05_04_0200 +
           18986183-18986330,18986434-18986513,18987237-18987431,
           18989147-18989233,18990011-18990061,18990211-18990390,
           18990863-18991096
          Length = 324

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 250 PRNWPWPKPSPKSHGS*R 303
           PR  PWP+P P   G+ R
Sbjct: 23  PRRIPWPRPLPSRRGALR 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,034,324
Number of Sequences: 37544
Number of extensions: 158553
Number of successful extensions: 380
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)