Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P01
         (388 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   1e-07
SB_3064| Best HMM Match : Adhesin_P1 (HMM E-Value=2.3)                 27   7.1  

>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 39.1 bits (87), Expect(2) = 1e-07
 Identities = 18/33 (54%), Positives = 24/33 (72%)
 Frame = +3

Query: 222 RKLYLAIESSQELAVAKAKSEITRLITEELLKL 320
           RK+YL IE   E A+  AKSEI R++ EEL++L
Sbjct: 517 RKIYLYIEGPSERAIQLAKSEIKRIVKEELVRL 549



 Score = 32.7 bits (71), Expect(2) = 1e-07
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +3

Query: 126 KEALALISEYSEAGITVRGTY 188
           KE +  I+EYSE  +TVRGTY
Sbjct: 460 KETIMTITEYSECAVTVRGTY 480


>SB_3064| Best HMM Match : Adhesin_P1 (HMM E-Value=2.3)
          Length = 353

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 227 FPLAVGRRLPGR-YVSAPDRDAGFRVLAYQGQRLLKHNCTN 108
           FP  +    PG+ Y   P RD  FRV    GQ + + N  N
Sbjct: 225 FPAGITNTTPGQAYTETPRRDK-FRVPGTPGQNIAESNVPN 264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,511,024
Number of Sequences: 59808
Number of extensions: 185041
Number of successful extensions: 354
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)