Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O24
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    52   7e-09
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.3  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 51.6 bits (118), Expect = 7e-09
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 5/143 (3%)
 Frame = +3

Query: 99  KVAVVTGANKGIGYEIVKGLCRQFDGVVYLTARNEDRGRNAVKKLQELGFNPLFHILDVT 278
           +VA+VTGAN GIG  +++ L  +   V+ + A   D+ +  V++L+      +    D++
Sbjct: 8   EVALVTGANSGIGKCLIECLVGKGMKVIGI-APQVDKMKTLVEELKSKPGKLVPLQCDLS 66

Query: 279 SEISIQDFATYISKCHSGIDVLVNNAGI-LDFDKSVSSYEDSKKLIDTNFMSLLSISKIL 455
           ++  I     ++ K    ID+L+NNA I +D         D KK+ D N + L  + + +
Sbjct: 67  NQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMIQEV 126

Query: 456 YPLLK----NNARIINLSSDWGL 512
             L+K    NN  I+N++   GL
Sbjct: 127 LKLMKKKGINNGIIVNINDASGL 149


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 183 YLTARNEDRGRNAVKKLQELGFNPLFHILDVTSEISIQDFATYISK 320
           ++  +N+D  RN  +K QE+ FN  F    + SE   +DF  +I K
Sbjct: 103 FIVVKNDDNFRNISEKYQEI-FNGYF----LNSE--SKDFIDFIQK 141


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 211 PRSSFLAVRYTTPSNCRH 158
           PRS+ LA R  T S+C +
Sbjct: 326 PRSAVLAAREITSSSCSY 343



 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 246 FNPLFHILDVTSEISIQDFATYISKCH 326
           F+P  H++D++S    +D   Y S  H
Sbjct: 49  FSPSTHLMDLSSPPEHRDLPIYQSHHH 75


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 132 IGYEIVKGLCRQFDGVVYLTARNEDRGRNAV 224
           +G+E  KGL +Q  G+      +  +GR A+
Sbjct: 169 MGFEPGKGLGKQLQGISTPVEAHLRKGRGAI 199


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 607 TKKSLTNCIISTTVRSSFESLLSHI 533
           +K  + +C   TT    FE+L +HI
Sbjct: 133 SKLQVFDCRYVTTTSGMFEALCNHI 157


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 598 ISWWQLKMVKTHLYHLLDTMEIISIKVAM 684
           I+W  LKM++   +HL    + I +++ +
Sbjct: 559 IAWMALKMIQACSHHLTHKGKPIRMRIGI 587


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,731
Number of Sequences: 438
Number of extensions: 3528
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)