Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O21
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    26   1.9  
SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...    26   2.6  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   2.6  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    26   2.6  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   5.9  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    24   7.8  

>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 146 AAGMNVAPRTLPDLPYNPLL 87
           + GM+  PR L  +PY PLL
Sbjct: 197 STGMSTCPRILEFMPYEPLL 216


>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 296 DTRYPVFLKCCPSSDPVVLKAQQL 225
           D  YP+F+ C P+ DP    A+ L
Sbjct: 154 DVVYPIFITCDPARDPPQEMAEYL 177


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = -3

Query: 218 LPWSLTSVTEPFLRQSTWSG*VTCAAGMNVAPRTLPDLPYNPLLC 84
           LPW+LT +    ++Q+  +  ++   G+N    ++  +P + L C
Sbjct: 312 LPWNLTEIKRIDIQQADIAALMSYLVGLNFPVNSVGQIPLDYLDC 356


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 143 AGMNVAPRTLPDLPYNPLLCLVVLLKPFIACTNS 42
           AGM +A    P + Y+       ++ PF+AC N+
Sbjct: 105 AGMRIAKYIDPAVYYDKYARSPYIMSPFVACVNT 138


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 256 LEGQHFRKTGYLVSLSEQNLIDCSSAYGNNGCNGGL 363
           +EG++ +    ++S S   + + +S+ G NG NGG+
Sbjct: 1   MEGENSKSVHPILSHSTSVVSERASSSGVNGTNGGM 36


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = +1

Query: 169 VDWRKKGSVTEVKDHGKCGSCWAFSTTGSLEGQHFRKTGYLVSLS 303
           V W +   V    D   C S W   T G +   H     Y+ S+S
Sbjct: 111 VQWIENDMVFATGDDNGCVSVWDKRTEGGIIHTHNDHIDYISSIS 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,310,257
Number of Sequences: 5004
Number of extensions: 23449
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)