Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O20
         (361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    25   2.7  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   4.7  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    24   6.2  

>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 153 DNIYEYIDIILQK 115
           DN YEY+D+ L+K
Sbjct: 31  DNTYEYVDVFLEK 43


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 236 QNFRYFWHHQFVSNSLSKTLCPPPLSTMIIYTSTL 132
           + FRYF++  F+  SLS+ + P  +  +  Y + L
Sbjct: 111 EQFRYFYNMYFLLVSLSQLIPPLKIGYLSTYIAPL 145


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 25  LYLSKERGEYGLLNFG 72
           ++L +ERG YG   FG
Sbjct: 81  IFLDRERGSYGFKEFG 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,386,509
Number of Sequences: 5004
Number of extensions: 24498
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)