Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O20
         (361 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0660 - 19768165-19769394,19770500-19770752,19771307-197713...    30   0.48 
08_02_0661 - 19780036-19781002,19781244-19781298,19782760-19783099     29   1.5  
01_01_0934 + 7374381-7374652,7375339-7375864                           27   3.4  
04_04_1427 + 33491847-33491888,33493504-33493623,33493740-334939...    27   4.4  
01_01_1050 + 8283589-8283782,8284551-8284814,8284897-8284912,828...    27   5.9  

>08_02_0660 -
           19768165-19769394,19770500-19770752,19771307-19771372,
           19771524-19771588,19773265-19773343,19773920-19774293
          Length = 688

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 174 PPSPFHHDNIYEYIDII 124
           PP PFHH +IY+ ++++
Sbjct: 409 PPRPFHHGDIYQQVEVV 425


>08_02_0661 - 19780036-19781002,19781244-19781298,19782760-19783099
          Length = 453

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 174 PPSPFHHDNIYEYIDI 127
           PP PFHH ++Y+ +++
Sbjct: 190 PPRPFHHGDVYQQVEV 205


>01_01_0934 + 7374381-7374652,7375339-7375864
          Length = 265

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 5/46 (10%)
 Frame = -1

Query: 124 FTKNLK-VISKKLSTYS-WSQNLKDHIHPAPL---INIVTRLYNDI 2
           FT + K V+ + +ST S + +N  +H+HPA L   +++ T+++ DI
Sbjct: 140 FTPHAKQVVQEFMSTCSTYQRNKTEHLHPAGLLQSLSVPTQVWEDI 185


>04_04_1427 +
           33491847-33491888,33493504-33493623,33493740-33493976,
           33494754-33495638,33495733-33495837,33495920-33496064,
           33496146-33496310,33496391-33496629,33496724-33496756,
           33496840-33496921,33497017-33497177,33497282-33497455,
           33497549-33497731,33497832-33498019,33498155-33498251
          Length = 951

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 33  IKGAG*IWSFKFWDHEYVDNFLLITFKFFVK 125
           IKG G  W+   W +  V  F L  FKFF++
Sbjct: 812 IKGIGWGWAGVIWLYSIVFYFPLDIFKFFIR 842


>01_01_1050 +
           8283589-8283782,8284551-8284814,8284897-8284912,
           8285032-8285389,8285860-8286050,8286108-8286197,
           8287399-8287596
          Length = 436

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -1

Query: 118 KNLKVISKKLST---YSWSQNLKDHIHPAPLINIVTRL 14
           K + V+ +KLS     SWS ++K H+H    + + T L
Sbjct: 77  KLVAVVKEKLSNRQEVSWSNDIKRHLHDVMSLGVGTEL 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,291,074
Number of Sequences: 37544
Number of extensions: 137706
Number of successful extensions: 287
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)