Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O20
         (361 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.36 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   2.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   4.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.9  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 0.36
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 257 TVQVLQKQNFRYF--WHHQFVSNSLSKTLCPPP 165
           T  VLQ++   Y     H+FV+  L + L PPP
Sbjct: 347 TADVLQEEEEEYSPSVQHEFVTFDLDEPLPPPP 379


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 301 YKFVCKLKIKSADL 260
           Y+ +CK K+K ADL
Sbjct: 426 YQAICKPKLKIADL 439


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 230  FRYFWHHQ 207
            FR FWHH+
Sbjct: 980  FRGFWHHR 987


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 267 ALLILSLHTNLY*IYLHVAKLFFL 338
           A  +LS  TN+Y I +    LF+L
Sbjct: 103 ATCVLSCWTNIYYIIILAWALFYL 126


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 267 ALLILSLHTNLY*IYLHVAKLFFL 338
           A  +LS  TN+Y I +    LF+L
Sbjct: 156 ATCVLSCWTNIYYIIILAWALFYL 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,707
Number of Sequences: 438
Number of extensions: 1919
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)