Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O19
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   3.6  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   4.8  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    24   8.3  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    24   8.3  

>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 20/83 (24%), Positives = 34/83 (40%)
 Frame = +2

Query: 116  SAGAVGQLQGWXPASGCTXLSTQTAXSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAA 295
            +AG V +       S  + ++     SGA++ V  T          GS+  T+ +     
Sbjct: 769  TAGTVTETVISGSVSFMSTITAHDTSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGT 828

Query: 296  TAGLAYDNVNGHGATLTKTHIPG 364
            T+G   + V     T+T+T I G
Sbjct: 829  TSG-TVEVVEPTAGTVTETIISG 850


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 111  HIVQCSNQAFTSTYRL*PDQKK 46
            H V+C+N AFT +  + PD  +
Sbjct: 978  HDVECANAAFTRSISIDPDNSQ 999


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 299 AGLAYDNVNGHGATLTKTHIPG 364
           A  A DN+   GA+L   H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 292 GSQLHLVSEIYGAKGTEPV 236
           GS +H+VSE  G KG++ +
Sbjct: 760 GSDIHIVSEKRGKKGSKVI 778


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,476,318
Number of Sequences: 5004
Number of extensions: 25686
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)