Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O19
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0087 + 18970741-18972702                                         28   2.0  
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485...    28   2.0  
05_04_0356 - 20584212-20584628,20584798-20584899,20585658-205857...    27   6.0  

>11_05_0087 + 18970741-18972702
          Length = 653

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 180 VDXLVHPLAGXQPWSWPTAPADPHIVQCSNQA 85
           +D  VH LA  + W  P  P  P  + C NQ+
Sbjct: 529 LDESVHRLARRRGWPKPPPPPPPTKISCMNQS 560


>07_01_0646 +
           4853546-4853623,4853732-4855357,4855467-4855751,
           4856131-4856277
          Length = 711

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +2

Query: 113 GSAGAVGQLQGWXPASGCTXLSTQ-TAXSGAMVKVPITGNENHRLSALGSVDLTNQMKLG 289
           G AG   + +    A G    ST  +A  G  V   + G +NH +S +G          G
Sbjct: 161 GLAGFPKRDESAHDAFGAGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------G 211

Query: 290 AATAGLAYDNVNGHG 334
           A TAG AY+ +N  G
Sbjct: 212 AMTAGQAYEAMNNSG 226


>05_04_0356 -
           20584212-20584628,20584798-20584899,20585658-20585705,
           20586046-20586186,20586315-20586437,20587166-20587252,
           20587630-20587742,20587844-20587943,20588217-20588601,
           20588841-20588917,20589501-20589593,20589697-20589774,
           20590923-20591246
          Length = 695

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +2

Query: 125 AVGQLQGWXPASGCTXLSTQTAXSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAG 304
           A  +L+   PA+  +  S Q   S      P+  N N + S   SVD  N+M +GA + G
Sbjct: 571 AAAKLRDSDPAAPQSAQSLQNMTS-THTMYPVVNNGNSQSSR--SVDKVNEMSVGAGSDG 627


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,095,401
Number of Sequences: 37544
Number of extensions: 189899
Number of successful extensions: 425
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)