Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O19
         (364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025466-2|AAB71033.1|  261|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical pr...    26   7.0  
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr...    26   9.3  
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n...    26   9.3  

>AF025466-2|AAB71033.1|  261|Caenorhabditis elegans Hypothetical
           protein T23F4.1 protein.
          Length = 261

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 217 YNWKRKSQAQCPW 255
           Y WKRKS+++C W
Sbjct: 91  YLWKRKSRSRCEW 103


>Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical
           protein ZK666.7 protein.
          Length = 403

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 266 LTNQMKLGAATAGLAY--DNVNGHGATLTKTHIPG 364
           L  +MK+  A A +AY  DNVNG    L++   PG
Sbjct: 180 LATRMKVDVAIATVAYGQDNVNGFLRQLSQIATPG 214


>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical protein
            C01C7.1 protein.
          Length = 1043

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 269  TNQMKLGAATAGLAYDNVNGHGA 337
            T Q  L      LAYDN+NG GA
Sbjct: 989  TRQFPLVIDERNLAYDNLNGFGA 1011


>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
            non-receptor tyrosinekinase protein.
          Length = 1043

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 269  TNQMKLGAATAGLAYDNVNGHGA 337
            T Q  L      LAYDN+NG GA
Sbjct: 989  TRQFPLVIDERNLAYDNLNGFGA 1011


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,269,479
Number of Sequences: 27780
Number of extensions: 149533
Number of successful extensions: 269
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)