Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O19
         (364 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   5.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   7.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 95   VTRLSRARTGCDPTKRRYEEL 33
            V R  R+ +  DP +  YEEL
Sbjct: 1672 VIRSIRSHSTWDPRRHMYEEL 1692


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 351 VFVRVAPCPFTLS*ANPA 298
           +FV V PCP+     N A
Sbjct: 228 IFVPVKPCPWICELTNDA 245


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 155 PAXNPGVGPLLRLILILFNVVTRL 84
           P  NP +  LL L+ ILF  +  L
Sbjct: 41  PEPNPSLHYLLALLYILFTFLALL 64


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 86  LSRARTGCDPTKRRYEELGDIFVCL 12
           LSRAR   D   + Y E+G +F  +
Sbjct: 770 LSRARHHDDLYSQSYAEVGVLFASM 794


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,276
Number of Sequences: 438
Number of extensions: 1968
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)