Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O18
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    30   0.25 
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    29   0.58 
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   1.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   2.3  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    26   3.1  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    26   4.1  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   5.4  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   7.2  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   9.5  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
 Frame = -3

Query: 369 LFCSCYCRADIITGGAAHVKLIFTGTFYWIIKIALVPRLNSVTFILANTYAIIVSNKTFF 190
           L C C C+++     + +  L+FT  +  +I + +   + ++  + A   A+++ + +F 
Sbjct: 76  LLCRCICKSNC----SPYPILLFTRLYMCLISLLIDLSIWNIVPLNARWSALLLYSSSFM 131

Query: 189 ANTFYLTFLVMNATE---FYITIL 127
           A TF  T    N+ E   F++TIL
Sbjct: 132 ATTFQ-THTFTNSIETIFFFLTIL 154


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = -3

Query: 384 IGQWVLFCSCYCRADIITGGAAHVKLIFTGTFYWIIKIALVPRLNSVTFILANTYAIIVS 205
           +  W++ C C     I  G  A       G ++WI  +A       + ++    Y  ++ 
Sbjct: 83  VWSWIIGCICLIPVSISLGELASSMPTSGGLYFWIFTLASPSSRAFLCWVCG--YVSVLG 140

Query: 204 NKTFFANTFY 175
             T +A+T Y
Sbjct: 141 YATIYASTVY 150


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 302 LPVHSIGSSKLRLCRGSTLSHSFSRTHMPLLF 207
           LPV  +GSS + L  G  LSHS S +H  +++
Sbjct: 71  LPVTHVGSSFVEL--GQALSHSSSNSHTYIMY 100


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -3

Query: 315  VKLIFTGTFYWIIKIALVPRLNSVTFILANTYAIIVSNKTFFANTFYLTFLVMNATEFYI 136
            V L+F  T ++   IA     NS+  IL+  Y I +  K +  + +Y      N  +  +
Sbjct: 1280 VHLLFLLTIFYPCPIAYTYVRNSIFLILSICYTINICVKVYGLSFYYFFHSFWNMFDVVV 1339

Query: 135  TI 130
            T+
Sbjct: 1340 TL 1341


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -2

Query: 382 WAMGSVLFMLLQSRHYHRRGRTCKTHFYRYILLDHQN 272
           WA G +   +   RH  R  +  +  +Y   L+D +N
Sbjct: 545 WACGVIYMAMRTGRHLWRVAKKSEDEYYSRYLMDRKN 581


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 452 CIPVEQCINPAIKQKRHVKEVSCT 523
           CIPV   ++P +K + H+K   C+
Sbjct: 80  CIPVNINVSPLVKDELHLKRDFCS 103


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/36 (25%), Positives = 23/36 (63%)
 Frame = -1

Query: 155 MQLNFISRFLQVLSGGQATTQSDFSLVPLHFNSCVL 48
           ++++ +SR +++L GG+ +++   +L+PL      L
Sbjct: 172 LEIDQLSRLVEILEGGEISSEILDTLLPLEIEDLAL 207


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 291 FYWIIKIALV-PRLNSVTFILANTYAIIVSNKTFFA 187
           F W + + L+   + ++ F + +TY I   NKTF A
Sbjct: 100 FCWTVLLPLIFKHVWNLNFKIGDTYTIHARNKTFTA 135


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 150 TEFYITILTSSFRRASDHTIG 88
           TE+Y  ILT ++R  + HT G
Sbjct: 634 TEWYKNILTKNYRALTGHTDG 654


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,910
Number of Sequences: 5004
Number of extensions: 51594
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)