Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_O18
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0317 + 33097257-33097336,33098500-33098926,33100007-331000... 29 1.8
07_01_0616 + 4560866-4560952,4561144-4561208,4564481-4564913,456... 29 3.1
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548... 28 5.5
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 28 5.5
10_01_0328 + 3591270-3592268 27 7.2
11_06_0289 - 21969248-21973516 27 9.6
11_06_0185 + 21018045-21022307 27 9.6
08_01_0775 - 7531397-7531564,7531590-7532771 27 9.6
04_04_0851 + 28716695-28716820,28718134-28718283,28718804-287190... 27 9.6
>03_06_0317 +
33097257-33097336,33098500-33098926,33100007-33100078,
33100490-33100600,33100973-33101173,33102157-33102222
Length = 318
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 76 TNEKSDCVVACPPERTCKNRDIKFSCIHDQKCQ 174
T+E+SD VV CPP+ +R+ S + CQ
Sbjct: 38 TDEESDGVVICPPDGNNDDREEAISSNNHDNCQ 70
>07_01_0616 +
4560866-4560952,4561144-4561208,4564481-4564913,
4565634-4565786,4565875-4565946,4567602-4567712,
4568344-4568584,4568743-4568821,4568892-4569018
Length = 455
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 76 TNEKSDCVVACPPERTCKNRDIKFSCIHDQ 165
T+++SDCVV CPP + ++ S HD+
Sbjct: 62 TDDESDCVVICPPNGKAGHTEV-MSGRHDE 90
>06_03_1508 -
30653967-30654245,30654342-30654631,30654773-30654841,
30654854-30654921,30655016-30655492,30655578-30655874,
30655974-30656824,30656917-30656990,30657270-30657292,
30657709-30657772,30658098-30658370,30658511-30658587,
30658686-30658912
Length = 1022
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Frame = +1
Query: 112 PERT--CKNRDIKFSCIHDQKCQIKC----VCKEGFIRNNNGICVRENECDRVEPRHK 267
P RT C+ F C H C I C C E + GIC + + + HK
Sbjct: 169 PSRTLDCRGCCAGFFCPHGLTCMIPCPLGAYCPESTLNKTTGICDPKGSTSQTKCFHK 226
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 257 GSTLSHSFSRTHMPLLFLIKPSLQTH 180
G+ LSHSFSR L+F + SL H
Sbjct: 198 GAELSHSFSRNESTLIFGSQHSLDPH 223
>10_01_0328 + 3591270-3592268
Length = 332
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 382 WAMGSVLFMLLQSRHYHRRGRTCKTHFYRYILLDHQNCACAA 257
WA+G V+ LL R TC+ H LLD + C A
Sbjct: 227 WALGCVMAELLTGRFVFTSSETCEDHVLD--LLDLRECDVGA 266
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 363 CSCYCRADIITGGAAHVKLIFTGTFYWIIKIALVPRLNSVTF 238
CS + + ITG A +K I +F + I +PRL + F
Sbjct: 1355 CSTITKINFITGSAPRLKKIVWSSFTSLSGINNLPRLKELEF 1396
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 363 CSCYCRADIITGGAAHVKLIFTGTFYWIIKIALVPRLNSVTF 238
CS + + ITG A +K I +F + I +PRL + F
Sbjct: 1353 CSTITKINFITGSAPRLKKIVWSSFTSLSGINNLPRLKELEF 1394
>08_01_0775 - 7531397-7531564,7531590-7532771
Length = 449
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +2
Query: 314 TCAAPPVIMSALQ*HEQNRT--HCPILNIMCNRE-CYCYD--GYARDENNVCIPVEQCIN 478
T A P ++ ++ ++N H + N+ + C+ D G R+EN VC+P ++ +
Sbjct: 304 TLEAKPTLLDQIREAQKNDPDMHGILKNMKQGKAACFTEDEHGTLRNENRVCVPDDRELK 363
Query: 479 PAIKQKRH 502
I Q+ H
Sbjct: 364 QLILQEAH 371
>04_04_0851 +
28716695-28716820,28718134-28718283,28718804-28719035,
28719135-28719244,28719565-28719689,28719974-28720082,
28720677-28720721
Length = 298
Score = 27.1 bits (57), Expect = 9.6
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +1
Query: 28 IYAVCAASTQELKCNGTNEKSD-CVVACPPERTCKNRD--IKFSCIHD--QKCQIK 180
+ A+ ST +++ EK D CV+ C T KNRD K C H Q C K
Sbjct: 226 VIALLPTSTYKIRIFSRKEKHDECVICC---MTYKNRDRLTKLPCEHQYHQTCVTK 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,217,193
Number of Sequences: 37544
Number of extensions: 331052
Number of successful extensions: 756
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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