Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O16
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom...    26   2.0  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    26   2.0  
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    24   6.2  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    24   6.2  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    24   8.2  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    24   8.2  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    24   8.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   8.2  

>SPBC577.03c |||GCN5-related N-acetyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 189 PWTRTHVLKYYNYIRTIIETELT 121
           P+ + HVLKY+N+++     ELT
Sbjct: 18  PYQKCHVLKYHNWMKNEELQELT 40


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 177 THVLKYYNYIRTIIETELTYCARIDK 100
           TH++KY +Y+  ++   L Y  R+++
Sbjct: 278 THIIKYDDYLVHLVHETLQYSVRLEQ 303


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 185 QGSKYTDRFVVRYGTATSMYCFINHVPVLN 274
           Q S+Y++     YGTA+++   +N + VL+
Sbjct: 41  QISRYSNMLAEEYGTASNIKSRVNRLSVLS 70


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 190 ALDTHARVKILQLHQDNNRNRTHILRAHRQTYFLNME 80
           ALD+ + V + +   + +R+RT I+ AHR +   N +
Sbjct: 597 ALDSKSEVLVQKALDNASRSRTTIVIAHRLSTIRNAD 633


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 1   DNTCTDGYYLAYVCVCVGVLCACIDTVPY 87
           D    + YY  Y  +C G   A +D++ Y
Sbjct: 136 DRWAEENYYELYCQLCYGATVADVDSLEY 164


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 4   NTCTDGYYLAYVCVCVGVLCACIDTVPYLK 93
           N C  GYYLA +   V       +  P LK
Sbjct: 342 NVCPKGYYLAIISTIVETANPLSEIAPGLK 371


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = -3

Query: 208 PVSIFRALDTHARVKILQLHQDNNRNRTHILRAHRQTY 95
           PV ++     H  +  + ++Q  N + TH       TY
Sbjct: 283 PVELYNEFSNHGHILGVAINQSINEDMTHYAEVAVSTY 320


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 16/56 (28%), Positives = 21/56 (37%)
 Frame = -3

Query: 337 SLPNTRCWDITKKEHLXXXXXX*NRNVIYKTVHRCRCTVTNNKPVSIFRALDTHAR 170
           SLP T    IT  E         N    + T      TV  + P S+F    TH++
Sbjct: 188 SLPLTATHTITGGEDAATGAAVTNTTTTHITTSTNTSTVIPSNPNSVFLVDCTHSQ 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,791
Number of Sequences: 5004
Number of extensions: 29499
Number of successful extensions: 77
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)