Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O16
         (360 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0084 - 10477880-10477897,10477940-10478002,10479523-104795...    29   1.1  
08_02_1545 - 27790328-27790358,27790512-27791110,27791428-277916...    29   1.5  
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406...    27   4.4  

>10_06_0084 -
           10477880-10477897,10477940-10478002,10479523-10479575,
           10479774-10480589,10480889-10480998,10481338-10482068
          Length = 596

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +2

Query: 119 YVSSVSIIVLM*L*YFNTCVRVQGSKYTDRFVVRYGTATSMY 244
           Y+SS+ II L    + +T VR+ G   TD+ VV Y    S Y
Sbjct: 486 YLSSILIIKLACAGHSSTAVRIFGLLTTDKNVVTYTALMSAY 527


>08_02_1545 -
           27790328-27790358,27790512-27791110,27791428-27791648,
           27791852-27792071
          Length = 356

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/55 (21%), Positives = 24/55 (43%)
 Frame = +2

Query: 161 YFNTCVRVQGSKYTDRFVVRYGTATSMYCFINHVPVLNVNYIIKVFFFCYVPTPC 325
           YF   ++++G +  D+   +     S  C+      L++  ++    F Y P PC
Sbjct: 167 YFEFHLKIKGDEGVDKDFSKGLLEHSTICYTKQPMTLSLESLLSTIEFVYTPVPC 221


>12_01_0513 +
           4059586-4059620,4060155-4060365,4060470-4060724,
           4060801-4060865,4061120-4061194,4061440-4061575,
           4061661-4061753,4061838-4061983,4062074-4062174,
           4062259-4062434,4063823-4063900,4063991-4064199,
           4064286-4064378,4064888-4064971,4065405-4065506,
           4065591-4065678,4065756-4065809,4065869-4066075,
           4066970-4067026,4067171-4067225,4067737-4067813,
           4067941-4068007,4068383-4068444,4068541-4068603,
           4068702-4068830
          Length = 905

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 4/20 (20%)
 Frame = -2

Query: 80  TVSMHA----HNTPTHTHTY 33
           TV++H     HN+PTHTH+Y
Sbjct: 679 TVNVHMTQTPHNSPTHTHSY 698


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,852,498
Number of Sequences: 37544
Number of extensions: 164144
Number of successful extensions: 367
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)