Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O14
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    28   0.95 
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    26   5.1  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    25   6.7  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   8.9  

>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1028

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 146  YYNRYSSTVQFAGSHFDKLRIKKPDEFDMDIVIGLPLN 259
            ++ + S++  FAG+    L  +KPD+ D+D+   LP N
Sbjct: 887  HWFKLSASNLFAGAEHAGLNRQKPDKIDLDLYEPLPEN 924


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 65  SDEFVLHYKVFDSIFQHLHKKMKEVDLYYNRYSS 166
           SDE    +KV DS   +  K ++++ LYY   SS
Sbjct: 9   SDELHDDFKVVDSWINNGAKWLEDIQLYYKERSS 42


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +2

Query: 308 PNGVG-FVQLRMGVQYQRLPMRDGYDWQVNKAAY 406
           P+ VG +V L     YQ  P  D Y WQ    +Y
Sbjct: 508 PSKVGMYVPLESNTVYQHSPTYDTYGWQSMYPSY 541


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 488 CSKLFSQCS*TTLRIYPVLGNSIHLSTDRPLCSLANRNHLS*ATSGTGHPFLA 330
           C  LFS+ S   + + PVLG    + T   +        L+  T+G  +P LA
Sbjct: 444 CVMLFSRVSTIAVTVSPVLGIISSIITWLVVARAEGGKTLTIETTGANNPMLA 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,772
Number of Sequences: 5004
Number of extensions: 59105
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)