Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O14
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0198 - 5705488-5705652,5706138-5706263,5706606-5706754,570...    32   0.43 
02_01_0413 - 3028946-3031111                                           31   0.98 
08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492           29   2.3  
12_01_0999 - 10128057-10128143,10128346-10128516,10128602-101286...    29   4.0  
04_03_0988 - 21469811-21469831,21470823-21471047,21471327-214716...    28   5.2  
03_06_0401 - 33678814-33679185,33679564-33679676,33679785-336798...    28   5.2  
05_03_0080 - 8245082-8246656,8246657-8246935,8247502-8247513           27   9.2  

>09_02_0198 -
           5705488-5705652,5706138-5706263,5706606-5706754,
           5706841-5706952,5707240-5707278
          Length = 196

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 457 VQEHCEKSFEHFQYVWFTLLLCWRCSVFHKNIRIRPGDDFDNREQV 594
           V  H  K  E F+Y    +LLCW+ ++  +   +   +D DN + V
Sbjct: 137 VDLHIAKDIELFRYKLAGILLCWKTNMAAEASNVEQVEDTDNEDDV 182


>02_01_0413 - 3028946-3031111
          Length = 721

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = +3

Query: 120 TRK*KRLIYITTDTLVQSNLLVVTSINYVLKNLMNLTWILL 242
           T+K + L  IT  +L  +N   +T+  ++LKNL NLT +LL
Sbjct: 392 TKKIENLKSITFISLSYNNFKNITNTLHILKNLRNLTVLLL 432


>08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492
          Length = 1141

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 159 TLVQSNLLVVTSINYVLKNLMNLTWILLLVFP 254
           TL+  NLL + S+    + L NL W+ L+ FP
Sbjct: 834 TLIMCNLLHINSMIMEQQTLQNLQWLALVNFP 865


>12_01_0999 - 10128057-10128143,10128346-10128516,10128602-10128677,
            10128787-10128917,10129007-10129111,10129215-10129391,
            10129475-10129623,10129715-10129826,10131819-10132070,
            10132323-10132444,10132537-10133371,10133386-10133489,
            10133582-10133647,10133766-10133888,10133975-10134151,
            10134217-10134387,10134478-10134957,10135357-10135369
          Length = 1116

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 472  EKSFEHFQYVWFTLLLCWRCSVFHKNIRIRPGDDFDNREQV 594
            +K  E F+Y    +LLCW+ ++  +   +   +D DN + V
Sbjct: 1031 QKDIELFRYKLAGILLCWKTNMAAEVSDVEQVEDTDNEDDV 1071


>04_03_0988 -
           21469811-21469831,21470823-21471047,21471327-21471634,
           21471864-21472234,21472327-21472430,21473086-21473325
          Length = 422

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 285 NGFTKFSFILRGRPITISMSNSSGFLIRNLSK*LPANWTVLE 160
           +GF      + G PI  + S  +  L+RNL+K +  + ++LE
Sbjct: 115 DGFPTLMLFIHGVPIEYTGSRKADLLVRNLNKFVAPDVSILE 156


>03_06_0401 -
           33678814-33679185,33679564-33679676,33679785-33679834,
           33680024-33680103,33680541-33680635,33681079-33681124
          Length = 251

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 410 WKDESNYLTQDKFLM-WFKSIVKRALNTFNMSGLPYYYVGGVQYFIRTSESGPATTLIIE 586
           WK +  YL ++ +L  W +  ++      N+  + Y+  G ++ F++  E G A+ +   
Sbjct: 103 WK-QRKYLRKNIWLQTWLRQEIQALTRDENVDAIIYHIHGVIESFMKRQEKGHASKMAPP 161

Query: 587 NKSR 598
            K R
Sbjct: 162 EKRR 165


>05_03_0080 - 8245082-8246656,8246657-8246935,8247502-8247513
          Length = 621

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 162 LVQSNLLVVTSINYVLKNLMNLTWILLLVF 251
           +V   L+ +T ++  L  L+  TWILLL++
Sbjct: 530 VVARELIYITRVSGTLLKLVKETWILLLIY 559


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,958,444
Number of Sequences: 37544
Number of extensions: 329994
Number of successful extensions: 650
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)