Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O13
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   0.97 
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    25   9.0  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.0  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -2

Query: 599 QNVCYALSSIINLNLNTITKLFHTNATKIT*YRVKYTSLMN*RKQLLNVRLRSRQKL 429
           Q V Y +S+ +  N NT+++      +++   ++K  SL+N R  L  +   SR  +
Sbjct: 568 QTVQYQISNAVKENSNTLSEQIKNLESELNSSKIKNESLLNERNLLKEMLATSRSSI 624


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
 Frame = +1

Query: 376 VKSHVSFLTANRKQVSY-----WSFWRDLSLTFSNCFL 474
           VK+ +   T  +K  SY       F  D++L FSNCFL
Sbjct: 127 VKNPMDLGTIEKKLTSYEYSVPQEFIDDMNLMFSNCFL 164


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 421 SYWSFWRDLSLTFSNCFL*FIKLVYLTLYHVIL 519
           S W  W  LS  F+N  + +I  +YL  ++ +L
Sbjct: 350 SPWQLWPTLSKFFTNDNMPYISSIYLRHFNGVL 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,757
Number of Sequences: 5004
Number of extensions: 39346
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)