Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O13
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539...    29   4.0  
01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,380...    27   9.3  

>12_02_0870 - 23852923-23853228,23853416-23853728,23853813-23853938,
            23854038-23854243,23854311-23854443,23854607-23854688,
            23854785-23854914,23855034-23855126,23855211-23855333,
            23855786-23855977,23858230-23858394,23858697-23858768,
            23858826-23858945,23859873-23859949,23860032-23860398,
            23860738-23861871
          Length = 1212

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 349  Q*KSSTFITVKSHVSFLTANRKQVSYWSFWRDLSLTFS 462
            Q  ++T + V    + L+  R  V YWSF+RD    FS
Sbjct: 1125 QFNATTHVIVGGGGAMLSPFRATVPYWSFFRDYDFGFS 1162


>01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,
            3807118-3807282,3807363-3807657,3807739-3807953,
            3808125-3808430,3808539-3808602,3808735-3808974,
            3809150-3809253
          Length = 1493

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 415  QVSYWSFWRDLSLTFSNCFL*FIKLVYLTLYHVILVA 525
            +V +W +W+ L+L +    + FI L  + L+ V+ +A
Sbjct: 912  RVGFWVYWKYLTLAYRGALVPFILLAQI-LFQVLQIA 947


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,882,166
Number of Sequences: 37544
Number of extensions: 203548
Number of successful extensions: 366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)