Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O13
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   1.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.9  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 101 SYKLEEEVYRIDVKERENHLCLTYDLPIYIF 193
           S  +E+  +R+D+  R++ +    D+P YIF
Sbjct: 24  SINVEDMDFRVDMFVRQSWIESRLDMPDYIF 54


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 369 EGTRFLLIDISRDICQLKTKQLQTTNFLGLL 277
           EGT F+L D +    + +   L+   FLG++
Sbjct: 382 EGTYFILYDFNDIFEKDQASFLERERFLGII 412


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 369 EGTRFLLIDISRDICQLKTKQLQTTNFLGLL 277
           EGT F+L D +    + +   L+   FLG++
Sbjct: 382 EGTYFILYDFNDIFEKDQASFLERERFLGII 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,770
Number of Sequences: 438
Number of extensions: 2908
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)