Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O12
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar...    55   8e-09
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    53   4e-08
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    35   0.009
SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces pombe...    30   0.34 
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    29   0.45 
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    27   1.8  
SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr...    27   3.2  
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    25   7.4  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   7.4  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    25   7.4  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    25   7.4  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   9.7  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    25   9.7  

>SPAC26H5.09c |||GFO/IDH/MocA family
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 369

 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 25/73 (34%), Positives = 39/73 (53%)
 Frame = +2

Query: 245 PTAYHHGIVANSIANNKDVFCEKPIAETVEDTKKCYEAAKAKGRVLYAAFNRRFDPAYRN 424
           P   H+ +V+ ++   K V CEKP   T  + K+ ++ AK+K  +L    NRRFD  +  
Sbjct: 77  PPNVHYEVVSQALNAGKHVLCEKPFTPTYGEAKELFDLAKSKNLMLTVYQNRRFDGDFLT 136

Query: 425 LKNKVRNGEVGHV 463
            K  + NG +G V
Sbjct: 137 AKECIENGRLGEV 149


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 26/73 (35%), Positives = 38/73 (52%)
 Frame = +2

Query: 245 PTAYHHGIVANSIANNKDVFCEKPIAETVEDTKKCYEAAKAKGRVLYAAFNRRFDPAYRN 424
           P   H  IV  ++   K V CEKP   T E+ K+ YE A++K  +L    NRR+D  +  
Sbjct: 77  PPNVHSEIVKKALNAGKHVVCEKPFTPTYEEAKELYELAESKSLLLAIYQNRRWDGDFLT 136

Query: 425 LKNKVRNGEVGHV 463
            K  + +G +G V
Sbjct: 137 AKKIIESGRLGQV 149


>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +2

Query: 257 HHGIVANSIANNKDVFCEKPIAETVEDTKKCYEAAKAKGRVLYAAFNRRFDPAYRNLKNK 436
           H+ +V  ++ N+K V CEKP+     +  +  E A+A+       F  RF P  +  K  
Sbjct: 94  HYEVVKLALLNDKAVLCEKPLTINYPEALELVELARARNLFFAEGFWIRFYPIVKAAKTL 153

Query: 437 VRNGEV 454
           +    V
Sbjct: 154 LHEDRV 159


>SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 5/135 (3%)
 Frame = +2

Query: 242 TPTAYHHGIVANSIANNKDVFCEKPIAETVEDTKKCYEAAKAKGRVLYAAFNRRFDPAYR 421
           T TA+H  +      ++   FC KP+A+T  D +   EAA +K    +   +    P   
Sbjct: 190 TITAHHLYLTQKDWQDDPYCFC-KPVAKTERDRRALIEAATSKNPKFFFGSDSAPHPRSS 248

Query: 422 NLKNKVRNG----EVGHVQILKVTVRDSPLPGVEYLKTSGGVFHDCLVHDFDMTSWVLGE 589
            LK     G          + +V  ++  L  ++      G    C+  DF  ++ VL +
Sbjct: 249 KLKTPPAAGVFTQPFAASYLAEVFDKEGRLDALKDFACIFGRKFYCIPLDFKESNIVLKK 308

Query: 590 LPIRVQAS-ASXLIP 631
              RV  S A+ L+P
Sbjct: 309 ESFRVPESVANDLVP 323


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 22/64 (34%), Positives = 33/64 (51%)
 Frame = +3

Query: 249 LPTIMESLPIPSLTTKMCSVKNPSLRLWKIPRSATKPPKLKAVFYMLLLTDVSIQLTETL 428
           +PTI   L IP     M  V +P   LWK  ++A K   L  +F + LL + S+  +E L
Sbjct: 312 VPTICLLLGIPIPKGNMGKVLSPVTELWKDTKTA-KMAALSNLFQLSLLKNPSLTTSE-L 369

Query: 429 RTKY 440
            T++
Sbjct: 370 STQF 373


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 332 EDTKKCYEAAKAKGRVLYAAFNRRFDPAYRNLKNKVR 442
           +D  K        GR++ +AF   FDP Y NL   V+
Sbjct: 193 KDVMKVDIGVHVNGRIVDSAFTMSFDPQYDNLLAAVK 229


>SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 171

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 278 SIANNKDVFCEKPIAETVEDTKKCYEAAKAKGR-VLYAAFNRRFDPAYRNLKNKVRNGEV 454
           S++NNKD+   K I E +   KK   A  ++ +   +A  NR+++   +  + +  N ++
Sbjct: 36  SVSNNKDLKKNKEILEQLLTVKKELNATSSQDQFAKWARLNRKYEQLSQEWEKQSANVKI 95


>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 311 KPIAETVEDTKKCYEAAKAKGRVLYAAFN 397
           +PI+ TVE+T K YE        +  +FN
Sbjct: 190 RPISATVEETSKLYEVLAQVENGIQQSFN 218


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = -3

Query: 475 F*NLNVTNFSIAYFVLKVSVSWIETSVKSSI*NTAFSFGGFVALLGIFHSLSDGFFTEHI 296
           F  + V  FS+ Y+  K+S S + T+V        F +   +++L  F   S GFF   +
Sbjct: 564 FCGIYVFIFSVFYWFFKISSSSLATAV------LYFGYSLLISVLVFFLCGSVGFFGAFL 617

Query: 295 FV 290
           FV
Sbjct: 618 FV 619


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 264 ESLPIPSLTTKMCSVKNPSLRL 329
           ES+P P L  K+ S  NP L L
Sbjct: 53  ESMPAPKLFPKLTSKPNPQLNL 74


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 7/30 (23%), Positives = 19/30 (63%)
 Frame = +3

Query: 258 IMESLPIPSLTTKMCSVKNPSLRLWKIPRS 347
           ++++ P+P +   +  +  P +R+WK+ R+
Sbjct: 110 VLDNQPLPHVVNLVNDILPPCIRVWKMART 139


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 136 NISNKTKVXXXXXXXXXXGSIFAAVKLESKRCHRLHS 246
           NI N T             S  A+VKL S +C+ LHS
Sbjct: 596 NIMNDTIADSVITILLGIESSPASVKLTSHKCNHLHS 632


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 284 ANNKDVFCEKPIAETVEDTKKCYEAAKAKGRVLYAAFNRRFDPA-YRNLKNKVRNGE 451
           + +KD   ++ + +  E+ K+  EAAKA+   L+ A  ++  P  +   K +V+  +
Sbjct: 55  SGSKDAKRQEALRKRREEEKRAAEAAKAEVAALFNAIPKKQTPQNFLTRKEEVKESQ 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,184
Number of Sequences: 5004
Number of extensions: 50726
Number of successful extensions: 139
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)