Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O12
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0311 - 2753062-2753232,2753340-2753381,2754490-2754667,275...    52   3e-07
06_03_0472 + 21145523-21145892,21146098-21146141,21146916-211469...    29   3.3  
02_05_0303 + 27717097-27717149,27717515-27717635,27717746-277180...    28   7.6  
01_01_0912 - 7184483-7184860,7185419-7185814,7186009-7186076,718...    28   7.6  

>08_01_0311 -
           2753062-2753232,2753340-2753381,2754490-2754667,
           2755021-2755118,2755964-2756098,2756280-2756444,
           2756529-2756693,2757082-2757299,2758508-2758811
          Length = 491

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
 Frame = +2

Query: 242 TPTAYHHGIVANSIANNKD--VFCEKPIAETVEDTKKCYEAAKAKGRVL-YAAFNRRFDP 412
           +P   H+ I+ + I++ K   +  EKP+  TV+D +K  EAAK +  +L       R+ P
Sbjct: 138 SPNMTHYQILMDIISHAKPHHILVEKPLCTTVQDCQKVVEAAKQRSDILVQVGLEYRYMP 197

Query: 413 AYRNLKNKVRNGEVGHVQILKVTVRDSPLPGV-------EYLKTSGGVFHDCLVHDFDMT 571
               L + V++G +G V++  V +R+   P +        +   SGG   +   H FD+ 
Sbjct: 198 PVAKLIDTVKSGTLGQVRM--VAIREHRFPFLVKVNNWNRFNCNSGGTLVEKCCHFFDLM 255

Query: 572 SWVLGELPIRVQASAS 619
                  P+RV AS +
Sbjct: 256 RLFAAANPVRVMASGA 271


>06_03_0472 +
           21145523-21145892,21146098-21146141,21146916-21146974,
           21147090-21147162,21147281-21147342,21147424-21147499,
           21147618-21147692,21148699-21148782,21148947-21149015,
           21149614-21149673,21150211-21150288,21150468-21150556,
           21150868-21150964,21151084-21151137,21151643-21151738,
           21151930-21152118,21152200-21152277,21152511-21152555,
           21152728-21152820,21152907-21152987
          Length = 623

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 345 FLVSSTVSAMGFSQNTSLLLAMELATI 265
           F+V+  V   G+S  TSLL+ M LA I
Sbjct: 507 FIVAVVVKGFGYSNKTSLLVGMSLAQI 533


>02_05_0303 +
           27717097-27717149,27717515-27717635,27717746-27718057,
           27718172-27718276,27718367-27718821,27718964-27719094,
           27719215-27719268,27719378-27719747,27719848-27719981,
           27720081-27720319
          Length = 657

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 339 PRSATKPPKLKAVFYMLLLTDVSIQLTETLRTKYAMEKLVT 461
           P  + KP    A  Y LL   V +QL      K+AME L++
Sbjct: 448 PEDSHKPATSLAAAYRLLTPSVKVQLLIYFMLKFAMEILLS 488


>01_01_0912 -
           7184483-7184860,7185419-7185814,7186009-7186076,
           7186969-7187038
          Length = 303

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 308 HRTHLCC*RWNWQRFHDGRQSE 243
           H  HL    WNWQR+ DG ++E
Sbjct: 88  HWAHLSL--WNWQRYGDGPENE 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,781,946
Number of Sequences: 37544
Number of extensions: 323444
Number of successful extensions: 886
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)