Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O12
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z81113-2|CAB03279.1|  510|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 311 KPIAETVEDTKKCYEAAKAKGRVLYAAFNRRFDPAYRNLK 430
           KPI ET+ED +K   +A AK  +  A  ++     +RN K
Sbjct: 286 KPIVETIEDAEKKSHSALAKDIIKAANISKEKVDEWRNSK 325


>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = +2

Query: 350 YEAAKAKGRVLYAAFNRRFDPAYRNLKNKVRNGEVGHVQILKVTVRDSPLPGVEYLKTS 526
           Y ++  K +     F RRF PA + ++ K+RN +    ++L++++ DS  P + Y + S
Sbjct: 52  YTSSAPKKKRTPLRFTRRFSPAPKEVEAKLRNIDRSRDRVLQMSL-DSSGP-IHYFQDS 108


>Z81113-2|CAB03279.1|  510|Caenorhabditis elegans Hypothetical
           protein T03F6.2 protein.
          Length = 510

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 530 HLKSSSIQLQEEVNXXXXXLKSERDQLLHCVLCS*GF 420
           HL   S+Q+ E+ +        E ++L +CV+CS  F
Sbjct: 289 HLIEVSLQMAEDYDTCSDECDEEGEELPYCVVCSKSF 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,536,459
Number of Sequences: 27780
Number of extensions: 284157
Number of successful extensions: 716
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)