Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O12
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 330 WKIPRSATKPPKLKAVFY--MLLLTDVSIQLTETLRTKYAM 446
           W++P ++T PP +  ++Y   L L+  ++ LT  LR    M
Sbjct: 303 WQLPHNSTNPPNI-LLYYRDSLALSVFALILTALLRKMQEM 342


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 594  GSSPRTQLVMSKSCTKQSWKTPPEVFKYSTPGRGESLTVTFKI 466
            G+SP  + V+    +K SW+T  ++ +   PG  +++   F +
Sbjct: 902  GNSPIKRYVIEYKISKGSWET--DIDRVLVPGSQQNVAGVFNL 942


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +2

Query: 371 GRVLYAAFNRRFDPAYRNLKNKVRNGEV----GHVQILKVTVRDSPLPGVEYLKTSGGVF 538
           G+++   F+       ++ + KV  G V       +++ VT     + G E+L  SGG  
Sbjct: 256 GKMVNQKFSELIQSKPQHARRKVLAGIVQTKGSDAELICVTTGTKCVSG-EHLSVSGGAL 314

Query: 539 HDC 547
           +DC
Sbjct: 315 NDC 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,054
Number of Sequences: 438
Number of extensions: 3364
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)