Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O07
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      26   5.8  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   7.7  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    25   7.7  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   7.7  

>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 144 GPYPYRSVNGTNNHGYY*NFRH-HFYLLINMIIKT*KN*VCF 22
           GPY    +   +N GY+ + +H  F  L NM      N +CF
Sbjct: 359 GPYTASQIQAWSNEGYFTDAKHAAFIQLANMDEWMYPNNICF 400


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 313 DEHCHVTEIDPKKP 354
           D H HV E+ PK+P
Sbjct: 210 DRHLHVAEVPPKRP 223


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = -2

Query: 219 KRYHIIDFFYVAAFLMCQFLWFLRQGPYPYRSVNGTNNHGYY*NFRHHFYLLINMI 52
           KRY  +  + +   L+C+FL F   G   + S+   +  G++ N+R  ++L +  +
Sbjct: 19  KRYDTLHVWKLIKLLICKFLLFHDFGTALFTSLVKASMLGFH-NWRRTYWLYLKKL 73


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 550 CFNIISKHKLSLFSITFY*LFHCF 479
           CF II   K +L SI    L++CF
Sbjct: 152 CFRIIISQKAALVSIGISTLYYCF 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,923
Number of Sequences: 5004
Number of extensions: 57215
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)