Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O04
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    25   5.3  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   5.3  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   5.3  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    25   7.0  

>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 203 SMHGDDAKFTRQSYG*FEILGHRDEFRRR 289
           S   DD ++ R+S G ++   +RD++R R
Sbjct: 340 SSRSDDREYHRRSDGRYDRSNYRDDYRHR 368


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 321 IQNLRKLSRCHLRRNSSRCPNISNYP 244
           + NL   S+  LRR  SR P  SN P
Sbjct: 283 VDNLADFSQSPLRRGPSRFPTNSNVP 308


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 30  IYTIFTIFLSWKSVRADCGVVSKKDWGGLSPVHIEY 137
           I+T + +  S+ S+R        K WGG   V+I Y
Sbjct: 564 IFTSYVLIYSFASIRISSFYSPAKVWGGAFLVYILY 599


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 458 FTPHCNNDLTASSLLVRCLFIVVVTDEADPDRFP 357
           +TP+ N   T+   L+R L + VVT++ + ++ P
Sbjct: 250 YTPYLNTIQTSCPWLLRYLTVAVVTNQNNANQKP 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,302,427
Number of Sequences: 5004
Number of extensions: 48236
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)