Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O03
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    29   0.71 
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    27   1.6  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    26   5.0  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    26   5.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   5.0  
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    25   6.6  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    25   6.6  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    25   6.6  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   8.8  

>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 493  GIDAQPPSGPGFLYCTAEQLLIMIFHCT 576
            G+D +      F YC  +++  M+FHCT
Sbjct: 1142 GLDRENDIDGAFAYCWKDKVTQMVFHCT 1169


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 96  SNDTLIQVWKPHEKYEMLHILSKGH 170
           S+DT + VW    +Y+  H++S GH
Sbjct: 64  SDDTRLIVWDVFNEYKPRHLISTGH 88


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 397 HNLSATALALDHILLITFISLTTSPHIQASPPTILSTLA-VGLYW 266
           + L+A+   +  + L  F S  + PHI  +  TIL+TL+ +G  W
Sbjct: 382 YTLNASFSTIQFVALGVFHSKISDPHIGGTYMTILNTLSNLGGSW 426


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 351 ISRIWSRASAVAERLWSPETEGLRYMNKV 437
           +S+++SR   V ERL   E + L+Y +K+
Sbjct: 196 LSKLYSRRRQVLERLSKIEEQNLKYTSKL 224


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 492 ASGSYDTCALLDANTPRSAPCSCIEDLRFPGSITFPL 382
           +S  Y+T +LL ++TP S P S         + + PL
Sbjct: 272 SSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPL 308


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +1

Query: 67  RKCSTRGCLSPTIPSSKFGNHMKNMRCY 150
           R C T G  S      +FG H  NM CY
Sbjct: 96  RDCRTNGQQS----GGRFGGHRSNMNCY 119


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 67  RKCSTRGCLSPTIPSSKFGNHMKNMRCYTS*VKVT 171
           RKC  R C +PT P+S + +    +  +   VK++
Sbjct: 177 RKCRLRECSNPTRPNSNYCSDKHGVDFFREKVKLS 211


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 396 ITFPLQH*PLTIFYL*HSYR*QL--PPTYKLHLRLYCQR 286
           +T  L   PL+I +L   Y+ QL  PP +  H+R+  +R
Sbjct: 225 LTIMLSTGPLSISFLWEKYKRQLPNPPAFYDHIRVLLER 263


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 207 NGRGTKRMSRRLCDLYLRCVASHIF 133
           N +G       LC LYLR +  HIF
Sbjct: 360 NDKGNADAMLALCKLYLRGLPGHIF 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,056
Number of Sequences: 5004
Number of extensions: 58781
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)