Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_O03
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 61 8e-10
07_03_1000 - 23220878-23221821,23222164-23223001 47 1e-05
03_02_0187 - 6248226-6249226,6249296-6250148 41 0.001
02_01_0377 + 2728892-2729187,2729483-2729544,2730516-2730570,273... 29 2.2
04_01_0141 + 1631649-1631727,1633607-1633651,1633841-1634454,163... 29 3.0
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 28 5.2
11_06_0384 + 22990773-22990949,22991315-22991496,22992533-229928... 27 9.0
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 27 9.0
04_04_1157 - 31333870-31334220,31334440-31334590,31334678-313349... 27 9.0
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 60.9 bits (141), Expect = 8e-10
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Frame = +3
Query: 153 ILSKGHKVVYSS--AWYLDHLMSGGDWTNFYLSDPRQMVRQYSPTANVDNIVGGEACMWG 326
++ KG + + S+ WYLDHL W +FY S+P + TA ++GGE CMWG
Sbjct: 371 VVEKGFRCIMSNQGVWYLDHL--DVPWQDFYTSEPLAGINN---TAQQKLVLGGEVCMWG 425
Query: 327 EVVNDMNVISRIWSRASAVA 386
E + +V IW RA+A A
Sbjct: 426 ETADTSDVQQTIWPRAAAAA 445
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 201 DHLMSGGDWTNFYLSDPRQMVRQYSPTANVDN---IVGGEACMWGEVVNDMNVISRIWSR 371
D+ SGG W Y + R + + +VGGE MW E V+ + R+W R
Sbjct: 473 DYGTSGGSWCGPYKTWQRVYDYDVAGGLTAEEARLVVGGEVAMWTEQVDAAVLDGRVWPR 532
Query: 372 ASAVAERLWS 401
ASA+AE LWS
Sbjct: 533 ASAMAEALWS 542
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +3
Query: 297 IVGGEACMWGEVVNDMNVISRIWSRASAVAERLWS 401
++GGE +W E ++ + +R+W RA+A AE LWS
Sbjct: 532 VLGGEVALWSEQSDETVLDARLWPRAAAAAETLWS 566
>02_01_0377 +
2728892-2729187,2729483-2729544,2730516-2730570,
2730784-2730858,2730980-2731054,2731155-2731202,
2731548-2732357,2732450-2732498,2733157-2733266,
2733381-2733488,2733920-2733980
Length = 582
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 380 CSGKVMEPGNRRSSIHEQGAERGVFASRRAHVSYEPDAGSTHNPQAD 520
C G+ P R HE+G ER + SRRA + + +N Q++
Sbjct: 89 CGGRSESPTARFGFEHERGRERSMNTSRRAPDCLDSGCDAPYNGQSN 135
>04_01_0141 +
1631649-1631727,1633607-1633651,1633841-1634454,
1634569-1634627,1634721-1634911,1636739-1637073
Length = 440
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 69 EVFDEGVPLSNDTL-IQVWKPHEKYEMLHILSKGHKVVYSS 188
+ D+ V D L + + P E Y LH+++KG VVYS+
Sbjct: 164 KAMDDAVHDGVDILSLSIGGPFENYGTLHVVAKGIPVVYSA 204
>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 492 ASGSYDTCALLDANTPRSAPCSCIEDL 412
++G+ D D+ P PCSCI DL
Sbjct: 1011 SAGTQDGQVFRDSQVPPMPPCSCISDL 1037
>11_06_0384 +
22990773-22990949,22991315-22991496,22992533-22992887,
22993124-22993426,22994077-22994313
Length = 417
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Frame = +3
Query: 207 LMSGGDWTNFYLSD-----PRQMVRQYSPTANVDNIVGG 308
L + GD TNFYL + P++ V +P AN+ +V G
Sbjct: 98 LFAAGDLTNFYLENGPKIFPQRRVGFLTPVANLIGVVRG 136
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 333 QLPPTYKLHLRLYCQRWRWGCTGAPSAV 250
+L P LH RL C W CT APS++
Sbjct: 631 KLQPKRNLHPRLVCLEW---CTCAPSSI 655
>04_04_1157 -
31333870-31334220,31334440-31334590,31334678-31334909,
31335001-31335211,31335517-31335635,31335720-31335953,
31336000-31336201,31336297-31336676,31336792-31336856,
31337362-31337427,31337883-31337957,31338233-31338304,
31338994-31339062,31339150-31339221,31339325-31339396,
31339791-31339862,31339947-31340018,31340474-31340545,
31340645-31340828,31341474-31341588
Length = 961
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 549 LFGSAIQEAGSAWGLCVDPASG-SYDTCALLDANTPRSAPCSC 424
+F Q+A S+W L DP +G + D A+ D + + C C
Sbjct: 45 VFAKLGQQAQSSWNLSGDPCTGRATDGSAIDDTSFNPAITCDC 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,206,925
Number of Sequences: 37544
Number of extensions: 427758
Number of successful extensions: 1204
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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