Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O02
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   3.8  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   5.0  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   6.6  
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    25   8.8  

>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 49  NNISILENKRSVYNIAFCGYC 111
           +  S L    S+ N+A+CGYC
Sbjct: 224 DEFSALPTGSSITNLAYCGYC 244


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 399  NIISKVINRLNPN*WLISLNQN 464
            NI+S ++  L  N W+ +LN+N
Sbjct: 1325 NIVSHLLKLLEKNKWIFTLNEN 1346


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 21/92 (22%), Positives = 41/92 (44%)
 Frame = -3

Query: 290 KRVTHSFPVHSLYISTFAHLSDHLISLHPRVSQIFDLGLVCCMVYICQIINPLSCNR*HQ 111
           KR++   P H +Y +  +H  +   S HP  +++  L    C+  + Q    L CN    
Sbjct: 258 KRLSVRSPAHPIYQTQHSHYDETPTSHHPDPARLNFLSFSFCVNPMNQ---SLDCNTTPH 314

Query: 110 Q*PQKAMLYTERLFSRIEILLATYLVSTKKNC 15
           +    +++YT   +    +++A  L+ T   C
Sbjct: 315 RRNASSIIYTLMYY----LIIAPTLLITSAIC 342


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 149 DKYTPYNKPIQDQRFERLSDEVILSDPTNVQKLRYKENVLGK 274
           ++Y  YN  I   +F +L+  + L DPT+  +L+Y+  +L K
Sbjct: 42  EEYQKYN--IICGKFRQLAHRLSLLDPTDPFRLQYENLLLEK 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,207
Number of Sequences: 5004
Number of extensions: 49420
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)