Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O02
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0072 + 596333-597442                                             31   0.97 
06_03_1215 - 28474019-28474079,28475658-28476739                       29   2.2  
09_04_0597 - 18859601-18859818,18860914-18861083,18861250-188613...    28   6.8  
05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127     28   6.8  
08_02_1368 + 26440962-26441108,26441293-26441379,26441468-264415...    27   9.0  
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936...    27   9.0  

>06_01_0072 + 596333-597442
          Length = 369

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 282 DTFFPSTFSLYLNFCTFVGSLNITSS 205
           DT FPS   L+++ CT  GS+ ITS+
Sbjct: 191 DTAFPSLEELHISGCTLSGSIEITSA 216


>06_03_1215 - 28474019-28474079,28475658-28476739
          Length = 380

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 282 DTFFPSTFSLYLNFCTFVGSLNITSS 205
           DT FPS   L ++ CT  GS+ ITS+
Sbjct: 190 DTAFPSLEELQISGCTLSGSIEITSA 215


>09_04_0597 -
           18859601-18859818,18860914-18861083,18861250-18861303,
           18862759-18863284,18864465-18864663,18866787-18866852,
           18866999-18867300,18867394-18867634,18867716-18867973,
           18868076-18868207
          Length = 721

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +2

Query: 194 ERLSDEVILSDPTNVQKLRYKENVLGKNVSPSLEKS 301
           E  S++++L +P  V K    ++ LG+N SPSL+KS
Sbjct: 439 ESASNQMVLFNPETVAK---GQDELGENHSPSLQKS 471


>05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127
          Length = 649

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -3

Query: 314 EDNTNSFPKRVTHSFPVHSLYISTFAHLSDHLISLHPRVSQIFD 183
           ED T ++       +PVH   I    H+ D    L+P   ++ D
Sbjct: 244 EDPTLAYLPNSYGQYPVHIAAIKGHVHIVDQFFELYPNCGELLD 287


>08_02_1368 +
           26440962-26441108,26441293-26441379,26441468-26441560,
           26441755-26442000,26442097-26442315,26442653-26442808,
           26442893-26443052,26443148-26443299,26443375-26443462,
           26443533-26443588,26444952-26445026,26445184-26445270
          Length = 521

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +2

Query: 116 VIGYNLEGLLSDKYTPYNKPIQDQRFERLSDEVILSDPTNVQKLRYKEN 262
           ++G +   +LS+ +T       DQ+ + +SD+++    T VQ+L+ ++N
Sbjct: 211 IMGMDPSKILSNVHTSLLDGANDQQTKNISDDILNKLNTMVQQLKEEKN 259


>06_01_1133 +
           9364842-9364850,9364929-9365048,9365157-9365476,
           9366267-9366428,9367151-9367235,9367352-9367501,
           9367588-9367635,9367705-9367773,9367897-9368600,
           9369426-9369561,9369636-9369856,9370355-9370486,
           9371316-9371406,9371878-9371925,9372004-9372132,
           9372357-9372626
          Length = 897

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 124 TDDTNNSRKRQCYIRSVCSQES 59
           TD  ++SRK +C   S+C QE+
Sbjct: 511 TDGCDSSRKEECVDESICRQEA 532


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,317,937
Number of Sequences: 37544
Number of extensions: 255553
Number of successful extensions: 613
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)