Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O01
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    28   1.3  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   3.1  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   5.4  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    25   7.1  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    25   7.1  
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa...    25   9.4  

>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
 Frame = +3

Query: 141 IYFHKSKMDFFTKSCFLFLLFVGVNSMSLKGPALTRYDPCGLGIIYFDRLAYKHWQGVVN 320
           IY ++SK++    +C     F    S +L    +   D   L ++ FD ++ K ++G++ 
Sbjct: 545 IYINESKINLDVAACITGNFFGP--SFALYNSLIMLIDK--LEVLGFDIVSDK-FKGLLT 599

Query: 321 FGLYNNLIEAEMEIYFEKEVRIID-VSQNTSFLEISNNRRDFVIKPNGPIPKNYFFHL 491
             L+ +L    +E    K  + +D + QNT  +E  N   DF   P   I   +F  L
Sbjct: 600 PNLFESLFILNLERL--KAAKSMDHMKQNTFDMEFINYLSDFTNNPREVIDYQHFIEL 655


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 270 IIYFDRLAYKHWQGVVNFGLYNNLIEAEMEIYFEKEV-RIID 392
           I +  RL  K +   ++FG+++N    +++ +FEK +  ++D
Sbjct: 429 ISWASRLFTKGFWYAISFGVFSNCFSLQLQSFFEKHLGNVVD 470


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +3

Query: 468 PKNYFFHLSVENLNGNENDVPVVS---RFVLNNVTLCNDVIKASQTINSLNVTSNYAD*Y 638
           P +Y   +S+ N        P++S   +F  NNV+  +     ++TI   + TS+Y   Y
Sbjct: 64  PNSYSNGVSLSNGTLLSTSSPLISTSGQFTSNNVSTTSSQRHNTKTITFFSGTSDYTSVY 123

Query: 639 Y 641
           Y
Sbjct: 124 Y 124


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 374 FFEIYFHFSFNQVVIQTEVNNTLPMFIR 291
           F   +F F  + V++ TEVN   P F R
Sbjct: 471 FVRHFFMFLNDSVILATEVNEKAPRFYR 498


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +3

Query: 381 RIIDVSQNTSFLEISNNRRDFVIKPNGPIPKNYFFHLSVENLNGNENDVPVVSRFVLNNV 560
           R+ ++  + S L ++    + V +    + ++Y   L  +NL    ND    SRF+ NN 
Sbjct: 418 RVAELLYSLSMLSVNVVEAEPVARSASRLAQDYVSML--QNLCKTVNDKRRQSRFLSNNY 475

Query: 561 TLCNDVI 581
           TL + V+
Sbjct: 476 TLISTVL 482


>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
           Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 453 PNGPIPKNYFFHLSVENLNGNENDVPVVSRFVLNNVTLCND 575
           PN  +P  +FF + +   +G     P V+ FVL N  + ++
Sbjct: 224 PNVAVP-THFFKVIIAEKSGEPTSSPSVAAFVLPNKPIADN 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,559
Number of Sequences: 5004
Number of extensions: 53855
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)